Job Description P39399 Confidence 91.86% Date Thu Jan 5 12:00:34 GMT 2012 Rank 170 Aligned Residues 114 % Identity 14% Template c2zmeA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Resolution 2.90 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.										40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.				.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																			.	.																.	.	.	.	.	.	.	.	.																			.	.	.
Query SS confidence																			.	.																.	.	.	.	.	.	.	.	.																			.	.	.
Query Sequence		R	H	N	V	I	N	Q	V	I	D	D	M	A	R	G	H	I	.	.	P	S	P	L	P	S	Q	S	A	L	A	E	M	Y	N	.	.	.	.	.	.	.	.	.	I	S	R	T	T	V	R	H	I	L	S	H	L	R	E	C	G	V	.	.	.	L	T	Q	V	G	N	D	Y	V	I	A	R	K	P	D	H
Query Conservation																			.	.																.	.	.	.	.	.	.	.	.																			.	.	.
Alig confidence																			.	.						.										.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation																										.
Template Sequence		Y	Y	E	L	G	V	Q	I	I	E	V	C	L	A	L	K	H	R	N	G	G	L	I	T	.	L	E	E	L	H	Q	Q	V	L	K	G	R	G	K	F	A	Q	D	V	S	Q	D	D	L	I	R	A	I	K	K	L	K	A	L	G	T	G	F	G	I	I	P	V	G	G	T	Y	L	I	Q	S	V	P	A	E
Template Known Secondary structure																					T	T				.												T		S	S																	G	G	G		S	S							T	T							S
Template Predicted Secondary structure																										.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	G	F	A	C	T	T	A	S	M	S	E	Q	N	K	V	F	E	Q	A	F	F	T	M	I	N	Q	R	Q	L	R	P	G	E	T	F	S	E	L	Q	L	A	R	A	A	G	V	S	P	V	V	V	R	E	Y	L	L	K	F	G	R	Y	N	L	I	H	S
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Sequence		L	N	M	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	V	L	Q	.	L	A	E	K	N	G	Y	V	T	V	S	E	I	K	A	S	L	K	W	E	T	E	R	A	R	Q	V	L	E	H	L	L	K	E	G	L	A	W	L
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.			T	T	T	S																												T	T	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template SS confidence
		176	.	.	.	180																			.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions