Job Description P39399 Confidence 96.97% Date Thu Jan 5 12:00:34 GMT 2012 Rank 36 Aligned Residues 125 % Identity 15% Template c2plyB_ PDB info PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	S	Q	N	L	R	H	N	V	I	N	Q	V	I	D	D	M	A	R	G	H	I	P	S	P	L	P	S	Q	S	A	L	A	E	M	Y	N	I	S	R	T	T	V	R	H	I	L	S	H	L	R	E	C	G	V	L	T	Q	V	G	N	D	Y	V	I	A	R	K	P	D	H	D	D	G	F	A	C	T	T
Query Conservation
Alig confidence																							.	.																																																			.	.	.	.	.	.	.
Template Conservation																							.	.																																																			.	.	.	.	.	.	.
Template Sequence		P	S	F	S	E	T	Q	K	K	L	L	K	D	L	E	D	K	Y	R	V	S	.	.	R	W	Q	P	P	W	V	K	E	V	A	G	S	F	N	L	D	P	S	E	L	E	E	L	L	H	Y	L	V	R	E	G	V	L	V	K	I	N	D	E	F	Y	W	H	R	Q	A	L	G	E	.	.	.	.	.	.	.
Template Known Secondary structure																							.	.	T	T	S											T	T																	T	S				S	S	S	S											.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.																																																			.	.	.	.	.	.	.
Template SS confidence
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.			530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	M	S	E	Q	N	K	V	F	E	Q	A	F	F	T	M	I	N	Q	R	Q	L	R	P	G	E	T	F	S	E	L	Q	L	A	R	A	A	G	V	S	P	V	V	V	R	E	Y	L	L	K	F	G	R	Y	N	L	I	H	S	E	K	R	G	Q	W	S	M	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	E	V	I	K	N	.	L	A	S	T	G	P	F	G	L	A	E	A	R	D	A	L	G	S	S	R	K	Y	V	L	P	L	L	E	Y	L	D	Q	V	K	F	T	R	R	V	G	D	K	R	V	V	V	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.								.			T	T	S		B										T																T	T	S					T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template SS confidence
																580	.	.	.	.	.	.		.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions