Job Description P39399 Confidence 96.36% Date Thu Jan 5 12:00:34 GMT 2012 Rank 48 Aligned Residues 114 % Identity 14% Template c2pjpA_ PDB info PDB header:translation/rna Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna-binding domain of elongation factor2 selb from e.coli in complex with secis rna Resolution 2.30 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	V	I	D	D	M	A	R	G	H	I	P	S	P	L	P	S	Q	S	A	L	A	E	M	Y	N	I	S	R	T	T	V	R	H	I	L	S	H	L	R	E	C	G	V	L	T	Q	V	G	N	D	Y	V	I	A	R	K	P	D	H	D	D	G	F	A	C	T	T	A	S	M	S	E	Q	N	K	V	F	E
Query Conservation
Alig confidence																	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	I	W	Q	K	A	E	P	L	F	G	D	E	P	.	W	W	V	R	D	L	A	K	E	T	G	T	D	E	Q	A	M	R	L	T	L	R	Q	A	A	Q	Q	G	I	I	T	A	I	V	K	D	R	Y	Y	R	N	D	R	I	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									G	G	G		S	S	S		.										T	T																T	T	S						T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.		.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	F	F	T	M	I	N	Q	R	Q	L	R	P	G	E	T	F	S	E	L	Q	L	A	R	A	A	G	V	S	P	V	V	V	R	E	Y	L	L	K	F	G	R	Y	N	L	I	H	S	E	K	R	G	Q	W	S
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	F	A	N	M	I	R	D	L	D	Q	E	C	G	S	T	C	A	A	D	F	R	D	R	L	G	V	G	R	K	L	A	I	Q	I	L	E	Y	F	D	R	I	G	F	T	R	R	R	G	N	D	H	L	L
Template Known Secondary structure		.	.	.													S	S											T	S																T	S					T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions