Job Description P39399 Confidence 99.98% Date Thu Jan 5 12:00:34 GMT 2012 Rank 4 Aligned Residues 221 % Identity 21% Template c2di3A_ PDB info PDB header:transcription Chain: A: PDB Molecule:bacterial regulatory proteins, gntr family; PDBTitle: crystal structure of the transcriptional factor cgl29152 from corynebacterium glutamicum Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		N	L	R	H	N	V	I	N	Q	V	I	D	D	M	A	R	G	H	.	.	I	P	S	P	L	P	S	Q	S	A	L	A	E	M	Y	N	I	S	R	T	T	V	R	H	I	L	S	H	L	R	E	C	G	V	L	T	Q	V	G	N	D	Y	V	I	A	R	K	P	D	H	D	D	G	F	A	C	T	T	A	S
Query Conservation																				.	.
Alig confidence																				.	.
Template Conservation
Template Sequence		K	A	H	E	S	V	M	D	W	V	T	E	E	L	R	S	G	R	L	K	I	G	D	H	L	P	S	E	R	A	L	S	E	T	L	G	V	S	R	S	S	L	R	E	A	L	R	V	L	E	A	L	G	T	I	S	T	A	T	G	S	G	P	R	S	G	T	I	I	T	A	A	P	G	Q	A	L	S	L	S
Template Known Secondary structure																		T	S	S		T	T		B												T																	T	S					S	T	T	S	G	G	G										S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	E	Q	N	K	V	F	E	Q	A	F	F	T	M	I	N	Q	R	Q	L	R	P	G	E	T	F	S	E	L	Q	L	A	R	A	A	G	V	S	P	V	V	V	R	E	Y	L	L	K	F	G	R	Y	N	L	I	H	S	E	K	R	G	Q	W	S	M	K	Q	F	D	Q	S	Y	A	E	Q	L	F	E	L
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	L	Q	L	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Q	V	G	H	H	D	I	Y	E	T
Template Known Secondary structure								T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90																																																															.	.	.	.	.	.	.	.	.	100	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	M	L	E	T	H	S	L	Q	H	F	L	N	L	P	D	H	D	P	R	W	L	Q	A	K	T	M	L	E	R	H	R	L	L	R	D	N	I	G	N	S	F	R	M	F	S	Q	L	D	R	D	F	H	S	L	L	L	S	A	A	D	N	I	F	F	D	Q	S	L	E	I	I	S	V	I	F	H	F	H
Query Conservation
Alig confidence																							.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.
Template Sequence		R	Q	L	L	E	G	W	A	A	L	H	S	S	A	E	R	G	D	W	D	V	.	.	.	.	.	.	.	A	E	A	L	L	E	K	M	D	D	P	S	L	P	L	E	D	F	L	R	F	D	A	E	F	H	V	V	I	S	K	G	A	E	N	P	L	I	S	T	L	M	E	A	L	R	L	S	V	A	D	H
Template Known Secondary structure												T	B		T	T	T	S					.	.	.	.	.	.	.								T	T		T	T	S																		T	T	B	S	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.								.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		Y	Q	W	D	E	S	D	L	K	Q	R	.	.	.	N	I	I	A	V	D	E	H	M	T	I	L	S	A	L	I	C	R	S	D	L	D	A	T	L	A	L	R	N	H	L	N	S	A	K	Q	S	M	I	R	S
Query Conservation													.	.	.
Alig confidence													.	.	.
Template Conservation
Template Sequence		T	V	A	R	A	R	A	L	P	D	W	R	A	T	S	A	R	L	Q	K	E	H	R	A	I	L	A	A	L	R	A	G	E	S	T	V	A	A	T	L	I	K	E	H	I	E	G	Y	Y	E	E	T	A	A	A
Template Known Secondary structure							T	T		S																						T	T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions