Job Description P39399 Confidence 95.79% Date Thu Jan 5 12:00:34 GMT 2012 Rank 64 Aligned Residues 98 % Identity 13% Template c1u78A_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:transposable element tc3 transposase; PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna Resolution 2.69 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	Q	N	L	R	H	N	V	I	N	Q	V	I	D	D	M	A	R	G	H	I	P	S	P	L	P	S	Q	S	A	L	A	E	M	Y	N	I	S	R	T	T	V	R	H	I	L	S	H	L	R	E	C	G	V	L	T	Q	V	G	N	D	Y	V	I	A	R	K	P	D	H	D	D	G	F	A	C	T	T	A
Query Conservation
Alig confidence																						.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	G	S	A	L	S	D	T	E	R	A	Q	L	D	V	M	K	L	L	N	.	.	.	.	.	.	V	S	L	H	E	M	S	R	K	I	S	R	S	R	H	C	I	R	V	Y	L	K	D	P	V	S	Y	G	T	S	K	R	A	P	R	R	K	A	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S																	T	T	.	.	.	.	.	.											T												S	G	G	G	T	T										S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.							.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		S	M	S	E	Q	N	K	V	F	E	Q	A	F	F	T	M	I	N	Q	R	Q	L	R	P	G	E	T	F	S	E	L	Q	L	A	R	A	A	G	.	.	V	S	P	V	V	V	R	E	Y	L	L	K
Query Conservation																																								.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.										.	.																		.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.										.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	V	R	D	E	R	N	V	I	R	.	.	A	A	S	N	S	C	K	T	A	R	D	I	R	N	E	L	Q	L	S	A	S	K	R	T	I	L	N	V	I	K	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.										.	.																T	T			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.										.	.
Template SS confidence
												63	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions