Job Description P39399 Confidence 88.28% Date Thu Jan 5 12:00:34 GMT 2012 Rank 199 Aligned Residues 121 % Identity 12% Template c1u5tB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:defective in vacuolar protein sorting; vps36p; PDBTitle: structure of the escrt-ii endosomal trafficking complex Resolution 3.60 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.								.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.										.	.	.	.	.	.	.	50	.	.	.	.	.	.	.				.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.																.	.	.
Query SS confidence																			.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.																.	.	.
Query Sequence		R	H	N	V	I	N	Q	V	I	D	D	M	A	R	G	H	I	.	.	.	.	.	.	.	P	S	P	L	P	S	Q	S	A	L	A	E	M	Y	N	I	S	R	.	.	.	.	.	.	.	.	.	T	T	V	R	H	I	L	S	H	L	R	E	C	G	V	.	.	.	L	T	Q	V	G	N	D	Y	V	I	A
Query Conservation																			.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.																.	.	.
Alig confidence																			.	.	.	.	.	.	.								.											.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation																																	.
Template Sequence		L	D	E	I	A	R	E	I	Y	E	F	T	L	S	E	F	K	D	L	N	S	D	T	N	Y	M	I	I	T	L	V	.	D	L	Y	A	M	Y	N	K	S	M	R	I	G	T	G	L	I	S	P	M	E	M	R	E	A	C	E	R	F	E	H	L	G	L	N	E	L	K	L	V	K	V	N	K	R	I	L	C
Template Known Secondary structure															T	T	T	T	T	S	S	S									T	T	.									T	T	T	S	S	S													T	T	T	G	G	G	T			S							T	T	T
Template Predicted Secondary structure																																	.
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.		.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	P	D	H	D	D	G	F	A	C	T	T	A	S	M	S	E	Q	N	K	V	F	E	Q	A	F	F	T	M	I	N	Q	R	Q	L	R	P	G	E	T	F	S	E	L	Q	L	A	R	A	A	G	V	S	P	V	V	V	R	E	Y	L	L	K	F	G	R	Y	N	L	I	H	S
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	S	E	K	F	D	V	V	K	E	K	L	V	D	L	I	G	D	N	P	G	S	D	L	L	R	L	.	.	.	.	.	.	.	.	.	.	.	.	T	Q	I	L	S	S	N	N	S	K	S	N	W	T	L	G	I	L	M	E	V	L	Q	N	C	V	D	E	G	D	L	L	I
Template Known Secondary structure				S	S		S														S		S	B						.	.	.	.	.	.	.	.	.	.	.	.						T	S		T	T																			T	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.													.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions