Job Description P39399 Confidence 88.62% Date Thu Jan 5 12:00:34 GMT 2012 Rank 197 Aligned Residues 115 % Identity 14% Template c1u5tA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex Resolution 3.60 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.					.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																			.	.															.	.	.	.																								.
Query SS confidence																			.	.															.	.	.	.																								.
Query Sequence		R	H	N	V	I	N	Q	V	I	D	D	M	A	R	G	H	I	.	.	P	S	P	L	P	S	Q	S	A	L	A	E	M	Y	.	.	.	.	N	I	S	R	T	T	V	R	H	I	L	S	H	L	R	E	C	G	V	L	T	Q	V	.	G	N	D	Y	V	I	A	R	K	P	D	H	D	D	G	F	A	C	T
Query Conservation																			.	.															.	.	.	.																								.
Alig confidence																			.	.						.									.	.	.	.																								.
Template Conservation																										.
Template Sequence		Y	Y	E	V	C	L	K	V	I	E	I	C	R	Q	T	K	D	M	N	G	G	V	I	S	.	F	Q	E	L	E	K	V	H	F	R	K	L	N	V	G	L	D	D	L	E	K	S	I	D	M	L	K	S	L	E	C	F	E	I	F	Q	I	R	G	K	K	F	L	R	S	V	P	N	E	L	T	S	D	Q	T
Template Known Secondary structure																	T	T	T	S	S	S				.							T	T	T	T	T	T	T														T	T	T									T	T							S	S	S				T	T
Template Predicted Secondary structure																										.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	S	M	S	E	Q	N	K	V	F	E	Q	A	F	F	T	M	I	N	Q	R	Q	L	R	P	G	E	T	F	S	E	L	Q	L	A	R	A	A	G	V	S	P	V	V	V	R	E	Y	L	L	K	F	G	R	Y	N	L	I	H	S
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	E	I	C	S	I	L	G	Y	S	S	I	S	L	L	K	A	N	L	G	W	E	A	V	R	S	K	S	A	L	D	E	M	V	A	N	G	L	L	W	I
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T	T	T	S			B												S													T	T	S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		171																			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions