Job Description Q47706 Confidence 96.89% Date Thu Jan 5 12:37:07 GMT 2012 Rank 7 Aligned Residues 280 % Identity 15% Template c3rbhC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:alginate production protein alge; PDBTitle: structure of alginate export protein alge from pseudomonas aeruginosa Resolution 2.30 Å

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		119	120	.	.	.	.	.	.	.	.					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure												.	.	.	.																																																			.
Query SS confidence												.	.	.	.																																																			.
Query Sequence		N	S	L	L	K	L	G	R	F	G	.	.	.	.	T	D	Y	S	Y	G	S	L	P	Y	R	I	P	L	M	A	G	S	S	Q	R	T	L	P	T	V	S	E	G	A	L	G	Y	W	A	L	T	P	N	I	D	L	W	G	M	W	R	S	R	V	.	F	L	W	T	D	S	T	T	G	I	R	D	E	G	V
Query Conservation												.	.	.	.																																																			.
Alig confidence												.	.	.	.													.	.	.	.	.																				.														.									.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.																				.																							.	.	.	.	.	.	.
Template Sequence		E	F	W	V	D	Y	A	G	L	T	A	Y	P	G	E	H	L	R	F	G	R	Q	R	L	R	E	.	.	.	.	.	D	S	G	Q	W	Q	D	T	N	I	E	A	L	N	W	S	F	E	T	.	T	L	L	N	A	H	A	G	V	A	Q	R	F	S	E	Y	R	T	D	L	D	E	.	.	.	.	.	.	.
Template Known Secondary structure										S	S	S		T	T													.	.	.	.	.	T	T	S	S	S	B														.	S	S											S				B	T	T			S	.	.	.	.	.	.	.
Template Predicted Secondary structure																												.	.	.	.	.																				.																							.	.	.	.	.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.						.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.							250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																								.																									.	.											.	.	.	.	.	.
Query SS confidence																								.																									.	.											.	.	.	.	.	.
Query Sequence		Y	N	S	Q	T	G	K	Y	D	K	H	R	A	R	S	F	L	A	A	S	W	H	.	D	D	T	S	R	Y	S	L	G	A	S	V	Q	K	D	V	S	N	Q	I	Q	S	I	L	.	.	E	K	S	I	P	L	D	P	N	Y	.	.	.	.	.	.	T	L	K	G	E	L	L	G	F	Y	A	Q	L	E	G
Query Conservation																								.																									.	.											.	.	.	.	.	.
Alig confidence		.	.	.	.																			.																									.	.											.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	L	A	P	E	D	K	D	R	T	H	V	F	G	D	I	S	T	Q	W	A	P	H	H	R	I	G	V	R	I	H	H	A	D	D	S	D	K	T	Y	T	G	Q	L	T	W	L	G	I	E	A	T	G	D	A	Y	N	Y	R	S	S	X	P	L	N	Y	W	A	S	A	T	W	L	T	G	D	R
Template Known Secondary structure		.	.	.	.			T	T	T	T	T														T	T																S															S	T	T		T	T		S		S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.									.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.								.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.												.	.
Query SS confidence																						.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.												.	.
Query Sequence		L	S	R	N	T	S	Q	P	N	E	T	A	L	V	S	G	Q	L	T	W	.	.	.	.	.	.	.	.	N	A	P	W	G	S	V	F	G	S	G	G	Y	L	R	H	A	M	.	.	.	.	.	.	.	N	G	A	V	V	D	T	D	I	G	Y	.	.	P	F	S	L	S	L	D	R	N	R	E	G	M	Q
Query Conservation																						.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.												.	.
Alig confidence																						.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.												.	.
Template Conservation
Template Sequence		D	N	L	T	Q	S	G	D	V	N	A	F	G	V	D	L	G	L	R	W	N	I	D	E	Q	W	K	A	G	V	G	Y	A	R	G	S	G	G	G	K	D	G	E	E	Q	F	Q	Q	T	G	L	E	S	N	R	S	N	F	T	G	T	R	S	R	V	H	R	F	G	E	A	F	R	G	E	L	S	N	L	Q
Template Known Secondary structure																								S	S	S														S	G	G	G	T	T						S	B							T	T	S	S	S	S				T	T		T	T	T				S	S	S
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.													.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.
Query Sequence		S	W	Q	L	G	V	N	Y	R	L	T	P	Q	F	T	L	T	F	A	P	I	V	T	R	G	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	S	S	K	R	D	V	R	I	E	G	T	G	I	L	G	G	M	N	Y	R	V	S	E	G	P	L	Q	G	M	N	F	F	L	.	.	.	.	.	.	.	.
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.								.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.
Template Sequence		A	A	T	L	F	G	S	W	Q	L	R	E	D	Y	D	A	S	L	V	Y	H	K	F	W	R	V	D	D	D	S	D	I	G	T	S	G	I	N	A	A	L	Q	P	G	E	K	D	I	G	Q	E	L	D	L	V	V	T	K	Y	F	K	.	.	.	.	Q	G	L	L	P	A	S	X	S	Q	Y	V	D	E	P
Template Known Secondary structure												T	T	T													S	S	T	T	S						S							T	T																	S	.	.	.	.	S	S				T	T	S	G	G	G	G	T		S
Template Predicted Secondary structure																																																															.	.	.	.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.					440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
					388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	A	A	D	K	G	R	E	K	R	D	G	S	T	L	G	D	R	L	N	Y	W	D	V	K	M	S	I	Q	Y	D	F	M
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		S	A	L	I	R	F	R	G	G	L	F	K	P	G	D	A	Y	G	P	G	T	D	S	T	X	H	R	A	F	V	D	F	I	W	R
Template Known Secondary structure		S	S													T	T	S		T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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