Job Description Q47706 Confidence 90.33% Date Thu Jan 5 12:37:07 GMT 2012 Rank 9 Aligned Residues 311 % Identity 12% Template c3nsgA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi Resolution 2.79 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	R	I	R	L	K	N	E	L	R	R	A	D	K	P	S	A	G	A	G	R	D	I	Y	A	W	V	Q	G	G	L	L	D	F	N	S	G	Y	Y	S	N	I	I	G	V	E	G	G	A	Y	Y	V	Y	K	L	G	A	R	A	D	M	S	T	R	W	Y	L	D	G	D	K	S	F	G	F	A	L	G	A
Query Conservation
Alig confidence																												.										.	.	.	.	.	.	.																																	.	.	.	.	.
Template Conservation																												.										.	.	.	.	.	.	.																																	.	.	.	.	.
Template Sequence		D	L	Y	G	K	A	V	G	R	H	V	W	T	T	T	G	D	S	K	N	A	D	Q	T	Y	A	.	Q	I	G	F	K	G	E	T	Q	.	.	.	.	.	.	.	I	N	T	D	L	T	G	F	G	Q	W	E	Y	R	T	K	A	D	R	A	E	G	E	Q	Q	N	S	N	L	V	R	L	.	.	.	.	.
Template Known Secondary structure																S	T	T										.										.	.	.	.	.	.	.	S	S	S	S														S	S		T	T			S	T	T						.	.	.	.	.
Template Predicted Secondary structure																												.										.	.	.	.	.	.	.																																	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.								.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140																		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																				.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	K	I	K	P	S	E	N	S	L	L	K	L	G	R	F	G	T	.	D	Y	S	Y	G	S	L	P	Y	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	M	A	G	S	S	Q	R	T	L	P	T	V	S	E	G	A	L	G	Y	W	A	L	T	P	N	I	D	L	W	G	M
Query Conservation																				.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.											.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	A	F	A	G	L	K	Y	A	E	V	G	S	I	D	Y	G	R	N	Y	G	I	V	Y	D	V	E	S	Y	T	D	X	A	P	Y	F	S	G	E	T	W	G	G	A	Y	T	D	N	Y	X	T	S	R	A	G	G	L	L	T	Y	R	N	S	D	F	F	G	L	V	D	G	L	S
Template Known Secondary structure		.	.	.	.	.	.	.	.								T	T	T											T	T						T	T			S	S	S	S	S	S		S	T	T	T	S	S	S	S	S	T	T	S	S											S	S	S	S	S	S		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	S	R	V	F	L	W	T	D	S	T	T	G	I	R	D	E	G	V	Y	N	S	Q	T	G	K	Y	D	K	H	R	A	R	S	F	L	A	A	S	W	H	D	D	T	S	R	Y	S	L	G	A	S	V	Q	K	D	V	S	N	Q	I	Q	S	I	L	E	K	S	I	P	L	D	P	N	Y	T	L	K	G
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	G	I	Q	Y	Q	G	K	N	Q	D	N	H	S	I	N	S	.	.	.	.	.	.	.	.	.	.	.	.	Q	N	G	D	G	V	G	Y	T	X	A	Y	E	F	D	G	F	G	V	T	A	A	Y	S	N	S	K	R	T	N	D	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										B		S	S	S		G	G	G	.	.	.	.	.	.	.	.	.	.	.	.		B		S											T	T														S	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.													.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	L	G	F	Y	A	Q	L	E	G	L	S	R	N	T	S	Q	P	N	E	T	A	L	V	S	G	Q	L	T	W	N	A	P	W	G	S	V	F	G	S	G	G	Y	L	R	H	A	M	N	G	A	V	V	D	T	D	I	G	Y	P	F	S	L	S	L	D	R	N	R	E	G	M	Q	S	W	Q	L	G	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	D	R	D	G	N	G	D	R	A	E	S	R	A	V	G	A	K	Y	D	A	N	N	V	Y	L	A	A	V	Y	A	E	T	R	N	X	S	I	V	E	N	T	V	T	D	T	V	E	X	.	.	.	.	.	.	.	.	.	.	A	N	K	T	Q	N	L	E	V	V	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	S	S	S	S			S														T	T											S	S							T	T	T						.	.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.											.	250	.	.	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		N	Y	R	L	T	P	Q	F	T	L	T	F	A	P	I	V	T	R	G	Y	E	.	S	S	K	R	D	V	R	I	E	G	T	G	I	L	G	G	M	N	Y	R	V	S	E	G	P	L	Q	G	M	N	F	F	L	A	A	D	K	G	R	E	K	R	D	G	S	T	L	G	D	R	L	N	Y	W	D	V	K	M
Query Conservation																							.
Alig confidence																							.																							.	.	.	.
Template Conservation																																														.	.	.	.
Template Sequence		Q	Y	Q	F	D	F	G	L	R	P	A	I	S	Y	V	Q	S	K	G	K	Q	L	N	G	A	G	G	S	A	D	L	A	K	Y	I	Q	A	G	A	T	Y	Y	F	N	.	.	.	.	K	N	X	N	V	W	V	D	Y	R	F	N	L	L	D	E	N	D	Y	S	S	S	Y	V	G	T	D	D	Q	A	A	V
Template Known Secondary structure						T	T	S														S		T	T	T	T	S																		.	.	.	.	S	S																S	S		T	T	T	T		S	S
Template Predicted Secondary structure																																														.	.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.					.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		413	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	Q	Y	D	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	T	Y	Q	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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