Job Description Q47706 Confidence 100.00% Date Thu Jan 5 12:37:07 GMT 2012 Rank 5 Aligned Residues 371 % Identity 19% Template c3jtyB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:benf-like porin; PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5 Resolution 2.58 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		L	A	D	D	E	A	G	L	R	I	R	L	K	N	E	L	R	R	A	D	K	P	S	A	G	.	A	G	R	D	I	Y	A	W	V	Q	G	G	L	L	D	F	N	S	G	Y	Y	S	N	I	I	G	V	E	G	G	A	Y	Y	V	Y	K	L	G	A	R	A	D	M	S	T	R	W	Y	L	D	G	D	K	S
Query Conservation																											.
Alig confidence																											.																																																	.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		G	F	L	E	D	A	Q	A	N	L	T	L	R	N	F	Y	F	N	R	N	F	T	N	P	T	K	A	Q	G	K	A	E	E	W	T	Q	S	F	I	L	D	A	K	S	G	F	T	Q	G	T	V	G	F	G	M	D	V	L	G	L	Y	S	L	K	L	D	G	G	K	G	T	G	G	T	.	.	.	.	.	.
Template Known Secondary structure			T	T	T	T																			T	T	S	S																					S	S	S																			T	T	S			S	.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	F	A	L	G	A	V	K	I	K	P	S	E	N	S	L	L	K	L	G	R	F	G	T	D	Y	S	Y	G	S	L	P	Y	R	I	P	L	M	A	G	S	S	Q	R	T	L	P	T	V	S	E	G	A	L	G	Y	W	A	L	T	P	N	I	D	L	W	G	M	W	R	S	R	V	F	L	W	T	D	S
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	Q	L	L	P	L	P	A	D	N	F	G	R	L	G	V	A	F	K	A	R	L	S	Q	T	E	V	K	V	G	E	W	M	P	V	L	P	I	L	R	S	D	D	G	R	S	L	P	Q	T	F	R	G	G	Q	I	T	S	K	E	I	A	G	L	T	L	Y	G	G	Q	F	R	A	N	S	P	R	D	D	S
Template Known Secondary structure		.	S	S	S					S														T	T													T	T						S	S	S	S														S	T	T														T	T		S
Template Predicted Secondary structure		.
Template SS confidence
			106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		T	T	G	I	R	D	E	G	V	Y	N	S	Q	T	G	K	Y	D	K	H	R	A	R	S	F	L	A	A	S	W	H	.	.	D	D	T	S	R	Y	S	L	G	A	S	V	Q	K	D	V	S	N	Q	I	Q	S	I	L	E	K	S	I	P	L	D	P	N	Y	T	L	K	G	E	L	L	G	F	Y	A	Q	L
Query Conservation																																	.	.
Alig confidence										.	.	.	.	.																			.	.																																.
Template Conservation										.	.	.	.	.																																																				.
Template Sequence		S	M	S	D	M	S	M	F	.	.	.	.	.	G	K	A	A	F	T	S	D	R	F	N	F	Q	G	A	E	Y	A	F	N	D	K	R	T	Q	I	A	L	W	N	A	Q	L	K	D	I	Y	S	Q	Q	F	I	N	L	I	H	S	Q	P	L	G	.	D	W	T	L	G	A	N	L	G	F	F	Y	G	K	E
Template Known Secondary structure		S		B					T	.	.	.	.	.	T							S												T	T	T	T											T	T	T															S	.	S
Template Predicted Secondary structure										.	.	.	.	.																																																				.
Template SS confidence
		190	.	.	.	.	.	.	.						.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.						280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.
Query SS confidence																			.	.	.	.	.
Query Sequence		E	G	L	S	R	N	T	S	Q	P	N	E	T	A	L	V	S	.	.	.	.	.	G	Q	L	T	W	N	A	P	W	G	S	V	F	G	S	G	G	Y	L	R	H	A	M	N	G	A	V	V	D	T	D	I	G	Y	P	F	S	L	S	L	D	R	N	R	E	G	M	Q	S	W	Q	L	G	V	N	Y	R	L
Query Conservation																			.	.	.	.	.
Alig confidence																			.	.	.	.	.																												.	.	.	.
Template Conservation																																																			.	.	.	.
Template Sequence		D	G	S	A	R	A	G	D	M	E	N	R	T	W	S	G	L	F	S	A	K	Y	G	G	N	T	F	Y	V	G	L	Q	K	L	T	G	D	S	A	W	M	R	V	N	G	T	S	G	G	.	.	.	.	T	L	A	N	D	S	Y	N	A	S	Y	D	N	A	K	E	K	S	W	Q	V	R	H	D	Y	N	F
Template Known Secondary structure			T	T		T	T																	T	T													S	S					B	T	T				T	.	.	.	.	T	S	T	T			S	S					S	T	T												T
Template Predicted Secondary structure																																																			.	.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.					.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
						338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	T	P	Q	F	T	L	T	F	A	P	I	V	T	R	G	Y	E	S	S	K	R	D	V	R	I	E	G	T	G	I	L	G	G	M	N	Y	R	V	S	E	G	P	L	Q	G	M	N	F	F	L	A	A	D	K	G	R	E	K	R	D	G	S	T	L	G	D	R	L	N	Y	W	D	V	K	M	S
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																									.																																		.	.	.	.	.	.
Template Conservation																														.																																		.	.	.	.	.	.
Template Sequence		A	A	L	G	V	P	G	L	T	L	M	N	R	Y	I	S	G	S	N	V	H	T	A	T	V	S	D	G	.	K	E	W	G	R	E	S	E	V	A	Y	T	V	Q	S	G	T	L	K	N	L	N	L	K	W	R	N	S	T	M	R	R	D	.	.	.	.	.	.	F	S	N	N	E	F	D	E	N	R	L	I
Template Known Secondary structure		T	T	T	T		T	T																T	T					.															S	S	S	S	T	T													S	.	.	.	.	.	.	S		S
Template Predicted Secondary structure																														.																																		.	.	.	.	.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.		.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400							.	.	.	.	.	.	.	.	.	410	.	.
		414	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	Y	D	F	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	Y	P	L	S	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		413	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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