Job Description Q47706 Confidence 82.97% Date Thu Jan 5 12:37:07 GMT 2012 Rank 11 Aligned Residues 250 % Identity 11% Template c3a2rX_ PDB info PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis Resolution 2.30 Å

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		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140									.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.
Query Sequence		E	G	G	A	Y	Y	V	Y	K	L	G	A	R	A	D	M	S	T	R	W	Y	L	D	G	D	K	S	F	G	F	A	L	G	A	V	K	I	K	P	S	E	N	S	L	L	K	L	G	R	F	G	T	D	Y	S	Y	G	S	L	P	Y	R	I	.	.	.	.	.	.	.	.	P	L	M	A	G	S	S	Q	R
Query Conservation																																																																	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	M	K	A	I	W	Q	L	E	Q	K	A	S	I	A	G	T	N	S	G	W	G	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	F	I	G	L	K	G	G	F	G	T	V	R	A	G	N	L	N	T	V	L	K	D	S	G	D	N	V	N	A	W	E	S	G	S	N	T	E
Template Known Secondary structure		S													T	T	S					S	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S								T	T																G	G	G	T							G	G	G	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.																		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		150	.										.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure				.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.
Query Sequence		T	L	.	.	.	.	.	.	.	.	.	P	T	V	S	E	G	A	L	G	Y	W	A	L	T	P	N	I	D	L	W	G	M	W	R	S	R	V	F	L	W	T	D	S	T	T	G	I	R	D	E	G	V	Y	N	S	Q	T	G	K	Y	D	K	H	R	A	R	S	F	L	A	A	S	W	H	D	D	T	S	R
Query Conservation				.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	L	G	L	G	T	I	G	R	V	E	S	R	E	I	S	V	R	Y	D	S	P	V	F	A	G	F	S	G	S	V	Q	Y	V	P	R	D	N	A	N	D	V	D	K	Y	K	H	T	K	.	.	.	.	.	.	.	.	.	.	.	.	S	S	R	E	S	Y	H	A	G	L	K	Y	E	N	A	G	F	F
Template Known Secondary structure		T	T	T	S						T	T														B	T	T															S	T	T	S	S	S	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.															T	T
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.													.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		221	.	.	.	.	.	.	.	.																						230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	S	L	G	A	S	V	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	S	N	Q	I	Q	S	I	L	E	K	S	I	P	L	D	P	N	Y	T	L	K	G	E	L	L	G	F	Y	A	Q	L	E	G	L	S	R	N	T	S	Q	P	N	E	T	A	L	V	S
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																																																	.
Template Sequence		G	Q	Y	A	G	S	F	A	K	Y	A	D	L	N	T	D	A	E	R	V	A	V	N	T	A	N	A	H	P	V	K	D	Y	Q	V	H	R	V	V	A	G	Y	D	A	N	D	L	.	Y	V	S	V	A	G	Q	Y	E	A	A	K	N	N	E	V	G	S	I	K	G	K	K	H	E	Q	T	Q	V	A	A	T
Template Known Secondary structure																T	T	S		B			T	T		T	T																			T	T		.															S	S	S	T	T	T	T
Template Predicted Secondary structure																																																	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	L	T	W	N	A	P	W	G	S	V	F	G	S	G	G	Y	L	R	H	A	M	N	G	A	V	V	D	T	D	I	G	Y	P	F	S	L	S	L	D	R	N	R	E	G	M	Q	S	W	Q	L	G	V	N	Y	R	L	T	P	Q	F	T	L	T	F	A	P	I	V	T	R	G	Y	E	S	S	K	R	D
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Sequence		A	A	Y	R	F	G	N	V	T	P	R	V	S	Y	A	H	G	F	K	A	K	V	N	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	A	N	Y	Q	Y	D	Q	V	I	V	G	A	D	Y	D	F	S	K	R	T	S	A	L	V	S	A	G	W	L	K	.	.	.	Q	G	K	G	A
Template Known Secondary structure						B	T	T																T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G													S	S	S	S												.	.	.		S	S	T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.																.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320				.	.	.	.	.
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	I	E	G	T	G	I	L	G	G	M	N	Y	R	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	K	V	E	Q	T	A	S	M	V	G	L	R	H	K	F
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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