Job Description Q47706 Confidence 100.00% Date Thu Jan 5 12:37:07 GMT 2012 Rank 3 Aligned Residues 351 % Identity 17% Template c2y0lA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:cis-aconitate porin opdh; PDBTitle: crystal structure of pseudomonas aeruginosa opdo Resolution 2.59 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	A	D	D	E	A	G	L	R	I	R	L	K	N	E	L	R	R	A	D	K	P	S	A	G	A	G	R	D	I	Y	A	W	V	Q	G	G	L	L	D	F	N	S	G	Y	Y	S	N	I	I	G	V	E	G	G	A	Y	Y	V	Y	K	L	G	A	R	A	D	M	S	T	R	W	Y	L	D	G	D	K	S
Query Conservation
Alig confidence																								.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	G	F	L	E	D	S	K	A	S	L	E	T	R	N	F	Y	M	N	R	D	F	.	.	.	.	.	.	R	K	R	E	E	W	A	Q	G	F	I	L	N	L	Q	S	G	Y	T	Q	G	T	V	G	F	G	L	D	A	M	G	M	L	G	V	K	L	D	S	P	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T	T	T																	.	.	.	.	.	.																				S	S	S																			.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.							.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	F	A	L	G	A	V	K	I	K	P	S	E	N	S	L	L	K	L	G	R	F	G	T	D	Y	S	Y	G	S	L	P	Y	R	I	P	L	M	A	G	S	S	Q	R	T	L	P	T	V	S	E	G	A	L	G	Y	W	A	L	T	P	N	I	D	L	W	G	M	W	R	S	R	V	F	L	W	T	D	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	D	T	Y	S	K	L	G	L	T	A	K	V	K	V	S	Q	S	E	L	K	V	G	T	L	I	P	K	L	P	S	V	Q	P	N	N	G	R	I	F	P	Q	I	F	E	G	A	L	L	T	S	K	E	I	K	D	L	G	F	T	A	G	R	L	E	K	T	K	I	D	S	E	D
Template Known Secondary structure		.	.	.	.	.	.	.	.															T	T												B	T	T	B					S	S	S	S													S	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		T	T	G	I	R	D	E	G	V	Y	N	S	Q	T	G	K	Y	D	K	H	R	A	R	S	F	L	A	A	S	W	H	.	D	D	T	S	R	Y	S	L	G	A	S	V	Q	K	D	V	S	N	Q	I	Q	S	I	L	E	K	S	I	P	L	D	P	N	Y	T	L	K	G	E	L	L	G	F	Y	A	Q	L	E
Query Conservation																																	.
Alig confidence																.	.	.	.	.													.																																.
Template Conservation																.	.	.	.	.																																													.
Template Sequence		L	A	L	N	D	K	N	G	R	F	A	G	V	S	.	.	.	.	.	A	D	H	F	D	L	G	G	L	D	Y	K	L	T	D	Q	L	T	A	S	Y	H	Y	S	N	L	Q	D	V	Y	R	Q	H	F	V	G	L	L	H	S	W	P	I	G	.	P	G	E	L	T	S	D	L	R	F	A	R	S	T	D	S
Template Known Secondary structure			B	B			G	G	G	S	S				B	.	.	.	.	.		S												S	S	S											T	T	T															S	.	S	S
Template Predicted Secondary structure																.	.	.	.	.																																													.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.						.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.						280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.																																																											.
Query SS confidence																		.	.	.	.	.																																																											.
Query Sequence		G	L	S	R	N	T	S	Q	P	N	E	T	A	L	V	S	.	.	.	.	.	G	Q	L	T	W	N	A	P	W	G	S	V	F	G	S	G	G	Y	L	R	H	A	M	N	G	A	V	V	D	T	D	I	G	Y	P	F	S	L	S	L	D	R	N	R	E	G	M	Q	S	W	Q	L	G	V	N	Y	R	L	.
Query Conservation																		.	.	.	.	.																																																											.
Alig confidence																		.	.	.	.	.																					.	.	.	.	.																																		.
Template Conservation																																											.	.	.	.	.
Template Sequence		G	S	A	K	A	G	G	I	D	N	K	S	L	N	G	M	F	T	Y	S	L	G	N	H	A	F	G	A	A	W	Q	R	M	N	G	D	D	A	F	P	Y	.	.	.	.	.	L	E	G	S	N	P	Y	L	V	N	F	V	Q	V	N	D	F	A	G	P	K	E	R	S	W	Q	L	R	Y	D	Y	D	F	V
Template Known Secondary structure		T	T		T	T																	T	T												S	S	S					.	.	.	.	.	B	T	T						T	T			S	S					S	T	T												G	G
Template Predicted Secondary structure																																											.	.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.						.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
					338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	T	P	Q	F	T	L	T	F	A	P	I	V	T	R	G	Y	E	S	S	K	R	D	V	R	I	E	G	T	G	I	L	G	G	M	N	Y	R	V	S	E	G	P	L	Q	G	M	N	F	F	L	A	A	D	K	G	R	E	K	R	D	G	S	T	L	G	D	R	L	N	Y	W	D	V	K	M	S	I
Query Conservation		.	.	.
Alig confidence		.	.	.																							.																												.	.	.											.	.	.	.
Template Conservation																											.																												.	.	.											.	.	.	.
Template Sequence		G	L	G	I	P	G	L	T	F	M	T	R	Y	V	K	G	D	N	V	E	L	A	G	Q	G	.	E	G	R	E	W	E	R	N	T	E	L	Q	Y	V	F	Q	S	G	A	L	K	N	L	G	I	R	W	.	.	.	R	N	A	T	F	R	S	N	F	T	.	.	.	.	R	D	I	D	E	N	R	L	I	V
Template Known Secondary structure		G	G	T		T	T																S				.																	S	S	T	T	T	T						.	.	.								S	S	S	.	.	.	.
Template Predicted Secondary structure																											.																												.	.	.											.	.	.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.				.	.	.	.	.	380	.	.	.	.					.	.	.	.	.	390	.	.	.	.
		415	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	D	F	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Y	T	L	P	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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