Job Description Q47706 Confidence 100.00% Date Thu Jan 5 12:37:07 GMT 2012 Rank 4 Aligned Residues 356 % Identity 19% Template c2qtkB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:probable porin; PDBTitle: crystal structure of the outer membrane protein opdk from2 pseudomonas aeruginosa Resolution 2.80 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	D	E	A	G	L	R	I	R	L	K	N	E	L	R	R	A	D	K	P	S	A	G	A	G	R	D	I	Y	A	W	V	Q	G	G	L	L	D	F	N	S	G	Y	Y	S	N	I	I	G	V	E	G	G	A	Y	Y	V	Y	K	L	G	A	R	A	D	M	S	T	R	W	Y	L	D	G	D	K	S	F	G
Query Conservation
Alig confidence																						.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	L	E	D	A	K	T	D	L	V	L	R	N	Y	Y	F	N	R	D	F	.	.	.	.	.	.	.	L	V	D	E	W	A	Q	G	F	I	L	K	F	S	S	G	Y	T	P	G	T	V	G	V	G	L	D	A	I	G	L	F	G	V	K	L	N	N	S	E	.	.	.	.	.	.	.	.	.	.	.	.	L
Template Known Secondary structure				S	S																	.	.	.	.	.	.	.																			S	S	S	S																		S	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.								.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.													.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	L	G	A	V	K	I	K	P	S	E	N	S	L	L	K	L	G	R	F	G	T	D	Y	S	Y	G	S	L	P	Y	R	I	P	L	M	A	G	S	S	Q	R	T	L	P	T	V	S	E	G	A	L	G	Y	W	A	L	T	P	N	I	D	L	W	G	M	W	R	S	R	V	F	L	W	T	D	S	T	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	L	H	A	A	D	N	Y	G	R	V	G	V	A	A	K	L	R	V	S	A	S	E	L	K	I	G	E	M	L	P	D	I	P	L	L	R	Y	D	D	G	R	L	L	P	Q	T	F	R	G	F	A	V	V	S	R	E	L	P	G	L	A	L	Q	A	G	R	F	D	A	V	S	L	R	N	S	A	D	M
Template Known Secondary structure		S						S														S	S													T	T						S	S	S	S														S	T	T														T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		G	I	R	D	E	G	V	Y	N	S	Q	T	G	K	Y	D	K	H	R	A	R	S	F	L	A	A	S	W	H	.	.	D	D	T	S	R	Y	S	L	G	A	S	V	Q	K	D	V	S	N	Q	I	Q	S	I	L	E	K	S	I	P	L	D	P	N	Y	T	L	K	G	E	L	L	G	F	Y	A	Q	L	E	G
Query Conservation																															.	.
Alig confidence								.	.	.	.	.																			.	.																																.
Template Conservation								.	.	.	.	.																																																				.
Template Sequence		Q	D	L	S	A	W	.	.	.	.	.	S	A	P	T	Q	K	S	D	G	F	N	Y	A	G	A	E	Y	R	F	N	R	E	R	T	Q	L	G	L	W	H	G	Q	L	E	D	V	Y	R	Q	S	Y	A	N	L	L	H	K	Q	R	V	G	.	D	W	T	L	G	A	N	L	G	L	F	V	D	R	D	D	G
Template Known Secondary structure		B				B	T	.	.	.	.	.	T		T	T	S			S												T	T	T	T											T	T	T															T	.	T																T
Template Predicted Secondary structure								.	.	.	.	.																																																				.
Template SS confidence
		164	.	.	.	.	.						170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.						280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.																																																											.	.
Query SS confidence																	.	.	.	.	.																																																											.	.
Query Sequence		L	S	R	N	T	S	Q	P	N	E	T	A	L	V	S	.	.	.	.	.	G	Q	L	T	W	N	A	P	W	G	S	V	F	G	S	G	G	Y	L	R	H	A	M	N	G	A	V	V	D	T	D	I	G	Y	P	F	S	L	S	L	D	R	N	R	E	G	M	Q	S	W	Q	L	G	V	N	Y	R	L	.	.
Query Conservation																	.	.	.	.	.																																																											.	.
Alig confidence																	.	.	.	.	.																												.	.	.	.																												.	.
Template Conservation																																																	.	.	.	.
Template Sequence		A	A	R	A	G	E	I	D	S	H	T	V	Y	G	L	F	S	A	G	I	G	L	H	T	F	Y	L	G	L	Q	K	V	G	G	D	S	G	W	Q	S	V	Y	G	S	S	G	R	.	.	.	.	S	M	G	N	D	M	F	N	G	N	F	T	N	A	D	E	R	S	W	Q	V	R	Y	D	Y	D	F	V	G
Template Known Secondary structure		T		T	T																	T	T													S	S					B	T	T			G	G	.	.	.	.	G	S	T	T		B	T	T	B				S	B	T												G	G	G
Template Predicted Secondary structure																																																	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.					.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
				338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	T	P	Q	F	T	L	T	F	A	P	I	V	T	R	G	Y	E	S	S	K	R	D	V	R	I	E	G	T	G	I	L	G	G	M	N	Y	R	V	S	E	G	P	L	Q	G	M	N	F	F	L	A	A	D	K	G	R	E	K	R	D	G	S	T	L	G	D	R	L	N	Y	W	D	V	K	M	S	I	Q
Query Conservation		.	.
Alig confidence		.	.																							.																													.	.											.	.	.	.	.
Template Conservation																										.																													.	.											.	.	.	.	.
Template Sequence		L	G	W	P	G	L	I	G	M	V	R	Y	G	H	G	S	N	A	T	T	K	A	G	S	.	G	G	K	E	W	E	R	D	V	E	L	G	Y	T	V	Q	S	G	P	L	A	R	L	N	V	R	L	N	.	.	H	A	S	N	R	R	S	F	N	S	.	.	.	.	.	D	F	D	Q	T	R	L	V	V	S
Template Known Secondary structure		G	T		T	T														B		S	S		S	.																	S	S	S	S	T	T							.	.							S	S	S		.	.	.	.	.
Template Predicted Secondary structure																										.																													.	.											.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.			.	.	.	.	370	.	.	.	.	.						.	.	.	.	380	.	.	.	.	.
		416	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	F	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	P	L	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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