Job Description Q47706 Confidence 100.00% Date Thu Jan 5 12:37:07 GMT 2012 Rank 2 Aligned Residues 351 % Identity 18% Template c2odjA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa Resolution 2.90 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	T	S	A	Y	A	A	Q	L	A	D	D	E	A	G	L	R	I	R	L	K	N	E	L	R	R	A	D	K	P	S	A	G	A	G	R	D	I	Y	A	W	V	Q	G	G	L	L	D	F	N	S	G	Y	Y	S	N	I	I	G	V	E	G	G	A	Y	Y	V	Y	K	L	G	A	R	A	D	M	S	T	R
Query Conservation
Alig confidence																																.	.	.	.	.	.	.																																								.	.	.	.
Template Conservation																																.	.	.	.	.	.	.																																								.	.	.	.
Template Sequence		F	V	S	D	Q	A	E	A	K	G	F	I	E	D	S	S	L	D	L	L	L	R	N	Y	Y	F	N	R	D	G	.	.	.	.	.	.	.	K	R	V	D	W	T	Q	G	F	L	T	T	Y	E	S	G	F	T	Q	G	T	V	G	F	G	V	D	A	F	G	Y	L	G	L	K	L	D	G	T	.	.	.	.
Template Known Secondary structure		S				T	T	S				S	S	S	B																	.	.	.	.	.	.	.																			S	S	S																			.	.	.	.
Template Predicted Secondary structure																																.	.	.	.	.	.	.																																								.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.								.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	Y	L	D	G	D	K	S	F	G	F	A	L	G	A	V	K	I	K	P	S	E	N	S	L	L	K	L	G	R	F	G	T	D	Y	S	Y	G	S	L	P	Y	R	I	P	L	M	A	G	S	S	Q	R	T	L	P	T	V	S	E	G	A	L	G	Y	W	A	L	T	P	N	I	D	L	W	G	M	W	R	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	S	R	A	G	G	A	V	K	V	R	I	S	K	T	X	L	K	W	G	E	X	Q	P	T	A	P	V	F	A	A	G	G	S	R	L	F	P	Q	T	A	T	G	F	Q	L	Q	S	S	E	F	E	G	L	D	L	E	A	G	H	F	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T												S	T	T	B						S	S	S														S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		R	V	F	L	W	T	D	S	T	T	G	I	R	D	E	G	V	Y	N	S	Q	T	G	K	Y	D	K	H	R	A	R	S	F	L	A	A	S	W	H	.	D	D	T	S	R	Y	S	L	G	A	S	V	Q	K	D	V	S	N	Q	I	Q	S	I	L	E	K	S	I	P	L	D	P	N	Y	T	L	K	G	E	L
Query Conservation																																									.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	E	L	Y	A	T	Y	A	G	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	S	A	D	F	I	G	G	R	Y	A	I	T	D	N	L	S	A	S	L	Y	G	A	E	L	E	D	I	Y	R	Q	Y	Y	L	N	S	N	Y	T	I	P	L	A	S	D	Q	S	L	G	F	D	F
Template Known Secondary structure							T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S											S	S	S	S											T	T	T																T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.																	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.						280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																										.	.	.	.	.
Query SS confidence																										.	.	.	.	.
Query Sequence		L	G	F	Y	A	Q	L	E	G	L	S	R	N	T	S	Q	P	N	E	T	A	L	V	S	.	.	.	.	.	G	Q	L	T	W	N	A	P	W	G	S	V	F	G	S	G	G	Y	L	R	H	A	M	N	G	A	V	V	D	T	D	I	G	Y	P	F	S	L	S	L	D	R	N	R	E	G	M	Q	S	W	Q
Query Conservation																										.	.	.	.	.
Alig confidence																										.	.	.	.	.																											.	.	.	.	.
Template Conservation																																																									.	.	.	.	.
Template Sequence		N	I	Y	R	T	N	D	E	G	K	A	K	A	G	D	I	S	N	T	T	W	S	L	A	A	A	Y	T	L	D	A	H	T	F	T	L	A	Y	Q	K	V	H	G	D	Q	P	F	D	Y	I	G	F	G	S	I	.	.	.	.	.	F	L	A	N	S	V	Q	Y	S	D	F	N	G	P	G	E	K	S	W	Q
Template Known Secondary structure										T	T		S	S																	T	T												S	S	S											.	.	.	.	.	S	S	T	T			S	S						T	T
Template Predicted Secondary structure																																																									.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.						.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		331	.	.	.	.	.	.					.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.													.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure									.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	V	N	Y	R	L	.	.	.	.	T	P	Q	F	T	L	T	F	A	P	I	V	T	R	G	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	S	S	K	R	D	V	R	I	E	G	T	G	I	L	G	G	M	N	Y	R	V	S	E	G	P	L	Q	G	M	N	F	F	L	A	A	D	K	G	R	E
Query Conservation									.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.
Template Conservation																																																																											.	.	.
Template Sequence		A	R	Y	D	L	N	L	A	S	Y	G	V	P	G	L	T	F	X	V	R	Y	I	N	G	K	D	I	D	G	T	K	X	S	D	N	N	V	G	Y	K	N	Y	G	Y	G	E	D	G	K	H	H	E	T	N	L	E	A	K	Y	V	V	Q	S	G	P	A	K	D	L	S	F	R	I	.	.	.	R	Q	A	W
Template Known Secondary structure								T	T	S	S	S		T	T																T	T			S	S		T	T	T	S	S	S				S	S																S	S	T	T	T	T						.	.	.
Template Predicted Secondary structure																																																																											.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390				.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	D	G	S	T	L	G	D	R	L	N	Y	W	D	V	K	M	S	I	Q	Y	D	F	M	L
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		H	R	A	N	A	D	Q	G	E	G	.	D	Q	N	E	F	R	L	I	V	D	Y	P	L	S	I
Template Known Secondary structure						T	T	T	S	S		.	S	B
Template Predicted Secondary structure												.
Template SS confidence
		395	.	.	.	.	400	.	.	.	.		.	.	.	.	.	410	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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