Job Description P43674 Confidence 97.42% Date Thu Jan 5 12:02:29 GMT 2012 Rank 3 Aligned Residues 119 % Identity 17% Template c3dtkA_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:irre protein; PDBTitle: crystal structure of the irre protein, a central regulator2 of dna damage repair in deinococcaceae Resolution 3.24 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.											.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.																		.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.																		.
Query Sequence		K	Y	G	K	R	L	A	K	I	A	K	A	L	G	N	N	I	N	G	T	P	.	.	.	.	.	.	.	.	.	.	V	N	Y	K	V	Y	M	T	S	D	V	N	A	W	A	M	A	.	N	G	C	V	R	V	Y	S	G	L	M	D	M	M	N	D	N	E	I	E	G	V	L	G	H	E	L	G	H	V	A
Query Conservation																							.	.	.	.	.	.	.	.	.	.																		.
Alig confidence																							.	.	.	.	.	.	.	.	.	.																		.								.	.	.	.
Template Conservation																																																										.	.	.	.
Template Sequence		A	A	K	A	R	M	R	E	L	A	A	S	Y	G	A	G	L	P	G	R	D	T	H	S	L	M	H	G	L	D	G	I	T	L	T	F	M	P	M	G	Q	R	D	G	A	Y	D	P	E	H	H	V	I	L	I	N	.	.	.	.	S	Q	V	R	P	E	R	Q	R	F	T	L	A	H	E	I	S	H	A	L
Template Known Secondary structure																	T	S	S		S	S							T	S	T	T									S	S							T	T	T	T						.	.	.	.	S	S	S
Template Predicted Secondary structure																																																										.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.											.	.	.	.	.	210
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	H	S	L	A	E	M	K	A	S	Y	A	I	V	A	A	R	D	A	I	S	A	T	S	G	V	A	S	Q	L	S	R	S	Q	L	G	D	I	A	E	G	A	I	N	A	K	Y	S	R	D	K	E	S	E	A	D	D	F	S	F	D	L	L	.	.	.	.	.	.	.	.	.	.	K	K	R	G	I	S
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	G	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	L	S	D	L	H	D	E	Y	E	G	D	R	L	E	Q	V	I	E	T	L	C	N	V	G	A	A	A	L	L	M	P	A	E	L	I	D	D	L	L	T	R	F	G	P	T
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T			T																				S												S		S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.																													.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		211	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	G	L	V	G	S	F	E	T	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	A	L	A	E	L	A	R	R	A	D
Template Known Secondary structure													T
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions