Phyre 2 alignment of P77730 with d1lc5a

Job Description P77730
Confidence 100.00% Date Thu Jan 5 12:32:10 GMT 2012

Rank 72 Aligned Residues 335

% Identity 19% Template d1lc5a_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 1.46

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence	R	D	P	S	V	V	P	F	A	S	A	F	P	D	P	R	L	F	P	L	Q	Q	L	N	R	S	L	A	Q	V	S	K	T	A	T	A	M	S	V	I	E	N	L	P	P	G	N	A	E	L	R	Q	A	I	A	R	R	Y	A	L	Q	G	I	T	I	S	P	D	E	I	V	I	T	A	G	A	L	E	A	L
Query Conservation
Alig confidence														.	.																			.	.	.	.	.																						.	.	.	.	.
Template Conservation														.	.																			.	.	.	.	.																						.	.	.	.	.
Template Sequence	S	P	D	Q	L	L	D	F	S	A	N	I	N	.	.	P	L	G	M	P	V	S	V	K	R	A	L	I	D	N	L	D	C	.	.	.	.	.	I	E	R	Y	P	D	A	D	Y	F	H	L	H	Q	A	L	A	R	H	H	Q	.	.	.	.	.	V	P	A	S	W	I	L	A	G	N	G	E	T	E	S	I
Template Known Secondary structure		G	G	G	S				S	S				.	.	T	T													T	G	G	G	.	.	.	.	.	G	G	S				T	T													T	.	.	.	.	.	S		G	G	G					S	S
Template Predicted Secondary structure														.	.																			.	.	.	.	.																						.	.	.	.	.
Template SS confidence
	22	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.

	181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence	N	L	S	L	Q	A	V	T	E	P	G	D	W	V	I	V	E	N	P	C	F	Y	G	A	L	Q	A	L	E	R	L	R	L	K	A	L	S	V	A	T	D	V	K	E	G	I	D	L	Q	A	L	E	L	A	L	Q	E	Y	P	V	K	A	C	W	L	M	T	N	S	Q	N	P	L	G	F	T	L	T	P	Q
Query Conservation
Alig confidence								.	.																																																										.
Template Conservation								.	.																																																										.
Template Sequence	F	T	V	A	S	G	L	.	.	K	P	R	R	A	M	I	V	T	P	G	F	A	E	Y	G	R	A	L	A	Q	S	G	C	E	I	R	R	W	S	L	R	E	A	D	G	W	Q	L	T	D	A	I	L	E	A	L	T	P	D	L	D	C	L	F	L	C	.	T	P	N	N	P	T	G	L	L	P	E	R	P
Template Known Secondary structure								.	.			S							S			T									T	T										G	G	G	T	T				T	T							T	T								.	S	S		T	T	T
Template Predicted Secondary structure								.	.																																																										.
Template SS confidence
	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.

	261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence	K	K	A	Q	L	V	A	L	L	N	Q	Y	N	V	T	L	I	E	D	D	V	Y	S	E	L	Y	F	G	R	E	K	P	L	P	A	K	A	W	D	R	H	D	G	V	L	H	C	S	S	F	S	K	C	L	V	.	P	G	F	R	I	G	W	V	A	A	G	K	H	A	R	K	I	Q	R	L	Q	L	M	S
Query Conservation																																																								.
Alig confidence																																				.	.																			.
Template Conservation																																				.	.
Template Sequence	L	L	Q	A	I	A	D	R	C	K	S	L	N	I	N	L	I	L	D	E	A	F	I	D	F	I	P	H	E	T	G	F	I	P	A	.	.	L	K	D	N	P	H	I	W	V	L	R	S	L	T	K	F	Y	A	I	P	G	L	R	L	G	Y	L	V	N	S	D	D	A	A	M	A	R	M	R	R	Q	Q	M
Template Known Secondary structure													T								T	T	G	G	G	S	T	T				S	G	G	G	.	.		T	T		T	T							S	T	T	T	T	T		T	T	T																				S
Template Predicted Secondary structure																																				.	.
Template SS confidence
	167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.

	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	L	S	T	S	S	P	M	Q	L	A	L	V	D	Y	L	S	T	R	R	Y	D	A	H	L	R	R	L	R	R	Q	L	A	E	R	K	Q	R	A	W	Q	A	L	L	R	Y	L	P	A	E	V	K	I	H	H	N	D	S	G	Y	F	L	W	L	E	L	P	E	P	L	D	A	G	E	L	S	L	A	A	L
Query Conservation
Alig confidence																	.	.	.																												.	.	.																				.	.
Template Conservation																	.	.	.																												.	.	.																				.	.
Template Sequence	P	W	S	V	N	A	L	A	A	L	A	G	E	V	A	L	.	.	.	Q	D	S	A	W	Q	Q	A	T	W	H	W	L	R	E	E	G	A	R	F	Y	Q	A	L	C	Q	L	.	.	.	P	L	L	T	V	Y	P	G	R	A	N	Y	L	L	L	R	C	E	R	.	.	E	D	I	D	L	Q	R	R	L	L
Template Known Secondary structure	T	T		S											G	G	.	.	.	G																									T	S	.	.	.	T	T							S	S	S							S		.	.	T	T
Template Predicted Secondary structure																	.	.	.																												.	.	.																				.	.
Template SS confidence
	245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.				.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310	.	.	.	.	.	.

	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	H	H	I	S	I	A	P	G	K	M	F	S	T	G	E	N	W	S	R	F	F	R	F	N	T	A	W	Q	W	G	E	R	E	E	Q	A	V	K	Q	L	G	K	L	I
Query Conservation
Alig confidence																	.	.										.	.
Template Conservation																	.	.										.	.
Template Sequence	T	Q	R	I	L	I	R	S	C	A	N	Y	P	G	L	D	.	.	S	R	Y	Y	R	V	A	I	R	.	.	S	A	A	Q	N	E	R	L	L	A	A	L	R	N	V	L
Template Known Secondary structure	T	T	T							T	T	S	T	T			.	.	T	T								.	.
Template Predicted Secondary structure																	.	.										.	.
Template SS confidence
	317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.			.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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