Phyre 2 alignment of P77730 with d1gc0a

Job Description P77730
Confidence 99.94% Date Thu Jan 5 12:32:10 GMT 2012

Rank 117 Aligned Residues 299

% Identity 17% Template d1gc0a_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like

Resolution 1.70

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	I	E	N	L	P	P	G	N	A	E	L	R	Q	A	I	A	R	R	Y	A	L	Q	G	I	T	I	S	P	D	E	I	V	I	T	A	G	A	L	E	A	L	N	L	S	L	Q	A	V	T	E	P	G	D	W	V	I	V	E	N	P	C	F	Y	G	A	L	Q	A	L	E	R	L	R	L	K	A	L	S	V
Query Conservation
Alig confidence																							.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.
Template Sequence	F	T	F	P	S	N	P	T	L	N	L	L	E	A	R	M	A	S	L	E	G	G	.	.	.	.	.	.	.	E	A	G	L	A	L	A	S	G	M	G	A	I	T	S	T	L	W	T	L	L	R	P	G	D	E	V	L	L	G	N	T	L	Y	G	C	T	F	A	F	L	H	H	G	I	G	E	F	G	V	K
Template Known Secondary structure																					T		.	.	.	.	.	.	.	S						S	S															T	T							S	S			S									T	G	G	G	G	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.
Template SS confidence
	38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.								60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110

	219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	T	D	V	K	E	G	I	D	L	Q	A	L	E	L	A	L	Q	E	Y	P	V	K	A	C	W	L	M	T	N	S	Q	N	P	L	G	F	T	L	T	P	Q	K	K	A	Q	L	V	A	L	L	N	Q	Y	N	V	T	L	I	E	D	D	V	Y	S	E	L	Y	F	G	R	E	K	P	L	P	A	K	A	W
Query Conservation
Alig confidence					.																										.	.									.	.	.																														.	.	.	.	.	.	.	.
Template Conservation					.																										.	.									.	.	.																														.	.	.	.	.	.	.	.
Template Sequence	L	R	H	V	.	D	M	A	D	L	Q	A	L	E	A	A	M	T	P	A	T	R	V	I	Y	F	E	S	P	A	.	.	N	P	N	M	H	M	A	D	.	.	.	I	A	G	V	A	K	I	A	R	K	H	G	A	T	V	V	V	D	N	T	Y	C	T	P	Y	L	Q	R	P	.	.	.	.	.	.	.	.
Template Known Secondary structure					.		T	T											T	T								S	S		.	.	T	T	T						.	.	.									G	G	G	T								T	T	T							G	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.																										.	.									.	.	.																														.	.	.	.	.	.	.	.
Template SS confidence
	132	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.				.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.

	299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence	D	R	H	D	G	V	L	H	C	S	S	F	S	K	C	L	V	.	P	G	F	R	I	G	W	V	A	A	G	K	H	A	R	K	I	Q	R	L	Q	L	M	S	T	L	S	T	S	S	P	M	Q	L	A	L	V	D	Y	L	S	T	R	R	Y	D	A	H	L	R	R	L	R	R	Q	L	A	E	R	K	Q	R
Query Conservation																		.
Alig confidence																		.																																									.	.	.
Template Conservation																																																											.	.	.
Template Sequence	L	E	L	G	A	D	L	V	V	H	S	A	T	Y	L	S	G	H	G	D	I	T	A	G	I	V	V	G	S	Q	A	L	V	D	R	I	R	L	Q	G	L	K	D	M	T	G	A	V	L	S	P	H	D	A	A	L	L	M	.	.	.	R	G	I	K	T	L	N	L	R	M	D	R	H	C	A	N	A	Q	V
Template Known Secondary structure	G	G	G	T		S										S		S	S	S																			T						T														.	.	.				T	T
Template Predicted Secondary structure																																																											.	.	.
Template SS confidence
	198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

	378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.																				.
Predicted Secondary structure																																	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	W	Q	A	L	L	R	Y	L	P	A	E	V	K	I	H	H	N	D	S	G	Y	F	L	W	L	E	L	P	E	P	L	.	D	A	G	E	L	S	L	A	A	L	T	H	H	I	S	I	A	P	G	K	M	F	S	T	G	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W
Query Conservation																																	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																						.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.
Template Sequence	L	A	E	F	L	A	R	Q	P	Q	.	V	E	L	I	H	Y	P	Q	P	G	G	M	I	A	F	E	L	K	G	G	I	G	A	G	R	R	F	M	N	A	L	Q	L	F	S	R	A	V	S	L	G	D	A	E	S	L	A	Q	H	P	A	S	M	T	H	S	S	Y	T	P	E	E	R	A	H	Y	G	I	S
Template Known Secondary structure							T		T	T	.										T	T							T	T													S	S	S				S			S		S	S						G	G	G	T	T	T	S	S	S								T	T
Template Predicted Secondary structure											.
Template SS confidence
	276	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

	438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	R	F	F	R	F	N	T	A	W	Q	W	G	E	R	E	E	Q	A	V	K	Q	L	G	K	L	I	Q
Query Conservation
Alig confidence																	.	.	.
Template Conservation																	.	.	.
Template Sequence	E	G	L	V	R	L	S	V	G	L	E	D	I	D	D	L	.	.	.	L	A	D	V	Q	Q	A	L	K
Template Known Secondary structure	T	T								S	S						.	.	.
Template Predicted Secondary structure																	.	.	.
Template SS confidence
	371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.				.	.	.	390	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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