Return to main results Retrieve Phyre Job Id

Job DescriptionP77730
Confidence99.88%DateThu Jan 5 12:32:10 GMT 2012
Rank173Aligned Residues358
% Identity16%Templated1c4ka2
SCOP infoPLP-dependent transferase-like PLP-dependent transferases Ornithine decarboxylase major domain
Resolution2.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   91........100.........110 .........120.........130.... .....140...... ...150.........
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Query Sequence  TYIFDMLQASRDPSVVPFAS. AFPDPRLFPLQQLNRSLAQVSKTA. . . . . . . . . TAMSVIENLPPG. NAELRQAIARRYA
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Template Sequence  PPFFKSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLIHEGPAVAAEKHAARVYN
Template Known Secondary structure 
TS




SSSTTTTTTTGGGS
SS


TTSGGG
BTTTTBTTT
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   108.110.........120.........130.........140.........150.........160.........170.........180.......
 
   160.........170.........180.........190.........200...... ...210.........220.... .....230.
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Query Sequence  LQGITISPDEIVITAGALEALNLSLQAVTEPGDWVIVENPCFYGALQ. ALERLRLKALSVATDVKE. . . . . GIDLQAL. .
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Template Sequence  AD. . . . . . KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDE
Template Known Secondary structure 
S......SS

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   188. 190.........200.........210.........220.........230.........240.........250.........260.
 
   232.......240.........250.........260.........270.........280.........290.........
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Query Sequence  . . . . . . . . . . . . ELALQEYPVKACWLMTNSQNPLGFTLTPQKKAQLVALLNQYNVTLIEDDVYSELYFGREKPLPAKAWD
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Template Sequence  KKIRELAAKVDPERAKWKRPFRLAVIQLG. . TYDGTIYN. . . AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLL
Template Known Secondary structure  TTTSST
S

BSSB..
TTS
...GGGBS
TT

GGGSSGGGGGG
TTS
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   262.......270.........280.........290 ........ .300.........310.........320.........330......
 
   300.. .......310.........320........ .330.........340.........350.........360...
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Query Sequence  RHD. . . . . . GVLHCSSFSKCLVPGFRIGWVAAGKH. . . . . . . . . . ARKIQRLQLMSTLSTSSPMQLALVDYLSTRRYDAH
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Template Sequence  IDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEA
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TTS

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TT

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   337..340.........350.........360.........370.........380.........390.........400.........410......
 
   364.....370.........380.........390...... ...400.
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Query Sequence  LRRLRRQLAERKQRAWQALLRYLPAEVKIHHND. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SGYFL
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Template Conservation 
          
   
  
                                                        

 

Template Sequence  GRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKF
Template Known Secondary structure  TT
SSSS
STTGGGS
TT
GGGGB

TT
TTT

TT

TT

TT
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   417..420.........430.........440.........450.........460.........470.........480.........490......
 
   402..... ..410.........420.........430.........440...... ...450.........460.......
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Query Sequence  WLELPE. . . . . . . . . . . PLDAGELSLAALTHHISIAPGKMFSTGENWSRFFRFNTA. WQWGEREEQAVKQLGKLIQER
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Template Sequence  MLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSD. . . . . . . . LNSILFLMTPAETPAKMNNLITQLLQLQRLI
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SSTTTT
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   497..500.........510.........520.........530..... ....540.........550.........560......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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