Phyre 2 alignment of P77730 with c3n5mD

Job Description P77730
Confidence 99.67% Date Thu Jan 5 12:32:10 GMT 2012

Rank 241 Aligned Residues 346

% Identity 10% Template c3n5mD_

PDB info PDB header:transferase Chain: D: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystals structure of a bacillus anthracis aminotransferase

Resolution 2.05 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	106	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence	V	P	F	A	S	A	F	P	D	P	R	L	F	P	.	L	Q	Q	L	N	R	S	L	A	Q	V	S	K	T	A	T	A	M	S	V	I	E	N	L	P	P	G	N	A	E	L	R	Q	A	I	A	R	R	Y	A	L	Q	G	I	T	I	S	P	D	E	I	V	I	T	A	G	A	L	E	A	L	N	L	S	L
Query Conservation															.
Alig confidence															.																									.	.	.	.	.														.	.
Template Conservation																																								.	.	.	.	.														.	.
Template Sequence	L	D	G	X	S	G	L	W	C	V	N	S	G	Y	G	R	K	E	L	A	E	A	A	Y	K	Q	L	Q	T	L	S	Y	F	P	X	S	Q	S	H	.	.	.	.	.	E	P	A	I	K	L	A	E	K	L	N	E	W	.	.	L	G	G	E	Y	V	I	F	F	S	N	S	G	S	E	A	N	E	T	A	F
Template Known Secondary structure			T	T					T		T	T		B														T	T		S				T	T	S			.	.	.	.	.														.	.		T	S								S	S
Template Predicted Secondary structure																																								.	.	.	.	.														.	.
Template SS confidence
	49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.						.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.

	185	.	.	.	.	190									.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.														.	.	.	.	.	220	.	.	.	.	.	.																.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	Q	A	V	T	E	P	.	.	.	.	.	.	.	.	G	D	W	V	I	V	E	N	P	C	F	Y	G	A	L	Q	A	L	E	R	L	R	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	S	V	A	T	D	V	K	E	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L
Query Conservation							.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	K	I	A	R	Q	Y	Y	A	Q	K	G	E	P	H	R	Y	K	F	X	S	R	Y	R	G	Y	H	G	N	T	X	A	T	X	A	A	T	G	Q	A	Q	R	R	Y	Q	Y	E	P	F	A	S	G	F	L	H	V	T	P	P	D	C	Y	R	X	P	G	I	E	R	E	N	I	Y	D	V	E	C	V	K	E	V
Template Known Secondary structure									T	T	T		T	T								T	T					S	S						S				G	G	G	T	T	T	T					S										T	T	T	S	T	T	T	T	T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
	122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

	229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	A	L	E	L	A	L	Q	E	Y	P	V	K	A	C	W	L	M	T	N	S	Q	N	P	L	G	F	T	L	T	P	Q	K	K	A	Q	L	V	A	L	L	N	Q	Y	N	V	T	L	I	E	D	D	V	Y	S	E	L	Y	F	G	R	E	K	P	L	P	A	K	A	W	D	R	H	D	G	V	L	H	C	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence	D	R	V	X	T	W	E	L	S	E	T	I	A	A	F	I	X	E	P	I	I	T	G	G	G	I	L	X	A	P	Q	D	Y	X	K	A	V	H	E	T	C	Q	K	H	G	A	L	L	I	S	D	E	V	I	C	G	F	G	R	T	G	K	A	F	G	F	X	N	Y	D	V	K	P	D	I	I	T	X	A	K
Template Known Secondary structure									G	G	G								S	S	B	T	T	T	T		B				T	T													T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	T	T				S						G
Template Predicted Secondary structure
Template SS confidence
	202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

	309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.								.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																													.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.
Query Sequence	S	F	S	K	C	L	V	P	G	F	R	I	G	W	V	A	A	G	K	H	A	R	K	I	Q	R	L	Q	.	.	.	.	.	.	.	L	M	S	T	L	S	T	S	S	P	M	Q	L	A	L	V	D	Y	L	S	T	R	R	Y	D	A	H	L	R	R	L	R	R	Q	L	A	E	R	K	Q	R	A	W	Q	A
Query Conservation																													.	.	.	.	.	.	.
Alig confidence									.	.	.																		.	.	.	.	.	.	.
Template Conservation									.	.	.
Template Sequence	G	I	T	S	A	Y	L	P	.	.	.	L	S	A	T	A	V	K	R	E	I	Y	E	A	F	K	G	K	G	E	Y	E	F	F	R	H	I	N	T	F	G	G	N	P	A	A	C	A	L	A	L	K	N	L	E	I	I	E	N	E	N	L	I	E	R	S	A	Q	X	G	S	L	L	L	E	Q	L	K	E	E
Template Known Secondary structure	G	G	G	T	T	S	S		.	.	.												G	G	G		S	S	S	T	T		S						S	S	S	S																		T	T
Template Predicted Secondary structure									.	.	.
Template SS confidence
	282	.	.	.	.	.	.	.				290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

	382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410										.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.		.	.	.	450	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.																																					.
Query SS confidence																														.	.	.	.	.	.	.	.	.																																					.
Query Sequence	L	L	R	Y	L	P	A	E	V	K	I	H	H	N	D	S	G	Y	F	L	W	L	E	L	P	E	P	L	D	.	.	.	.	.	.	.	.	.	A	G	E	L	S	L	A	A	L	T	H	H	I	S	I	A	P	G	K	M	F	S	T	G	E	N	W	S	R	F	F	R	F	N	T	A	.	W	Q	W	G	E
Query Conservation																														.	.	.	.	.	.	.	.	.																																					.
Alig confidence					.	.	.																							.	.	.	.	.	.	.	.	.																										.	.										.
Template Conservation					.	.	.																																																									.	.
Template Sequence	I	G	E	H	.	.	.	P	L	V	G	D	I	R	G	K	G	L	L	V	G	I	E	L	V	N	D	K	E	T	K	E	P	I	D	N	D	K	I	A	S	V	V	N	A	C	K	E	K	G	L	I	I	G	R	N	G	X	T	T	A	G	Y	.	.	N	N	I	L	T	L	A	P	P	L	V	I	S	S	E
Template Known Secondary structure		T	T	S	.	.	.	T	T							S	S	S										T	T	T	T																		T	T							T	T	S	S	T	T		.	.										T	T
Template Predicted Secondary structure					.	.	.																																																									.	.
Template SS confidence
	359	360	.	.				.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.			.	420	.	.	.	.	.	.	.	.	.	430	.	.	.

	452	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	E	E	Q	A	V	K	Q	L	G	K	L	I	Q	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence	E	I	A	F	V	I	G	T	L	K	T	A	X	E	R
Template Known Secondary structure														T	T
Template Predicted Secondary structure
Template SS confidence
	434	.	.	.	.	.	440	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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