Job Description P77730 Confidence 100.00% Date Thu Jan 5 12:32:10 GMT 2012 Rank 8 Aligned Residues 368 % Identity 18% Template c3if2B_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution Resolution 2.50 Å

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		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140										.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.																						.
Query SS confidence																																															.	.	.	.	.	.	.	.	.																						.
Query Sequence		M	L	Q	A	S	R	D	P	S	V	V	P	F	A	S	A	F	P	D	P	R	L	F	P	L	Q	Q	L	N	R	S	L	A	Q	V	S	K	T	A	T	A	M	S	V	I	.	.	.	.	.	.	.	.	.	E	N	L	P	P	G	N	A	E	L	R	Q	A	I	A	R	R	Y	A	L	Q	.	G	I	T	I
Query Conservation																																															.	.	.	.	.	.	.	.	.																						.
Alig confidence																																															.	.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		G	D	A	L	K	S	D	Q	P	V	N	X	L	G	G	G	N	P	A	K	I	D	A	V	N	E	L	F	L	E	T	Y	K	A	L	G	N	D	N	D	T	G	K	A	N	S	S	A	I	I	S	X	A	N	Y	S	N	P	Q	G	D	S	A	F	I	D	A	L	V	G	F	F	N	R	H	Y	D	W	N	L
Template Known Secondary structure						T	S	S	S						S																									S		T	T		S										S				T	T
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190									.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.							.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.						.
Predicted Secondary structure																											.	.	.	.	.	.	.	.																		.	.	.	.	.	.																			.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.																		.	.	.	.	.	.																			.	.	.	.	.
Query Sequence		S	P	D	E	I	V	I	T	A	G	A	L	E	A	L	N	L	S	L	Q	A	V	T	E	P	.	.	.	.	.	.	.	.	G	D	W	V	I	V	E	N	P	C	F	Y	G	A	L	Q	A	.	.	.	.	.	.	L	E	R	L	R	L	K	A	L	S	V	A	T	D	V	K	E	G	.	.	.	.	.	I
Query Conservation																											.	.	.	.	.	.	.	.																		.	.	.	.	.	.																			.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.																		.	.	.	.	.	.																			.	.	.	.	.
Template Conservation
Template Sequence		T	S	E	N	I	A	L	T	N	G	S	Q	N	A	F	F	Y	L	F	N	L	F	G	G	A	F	V	N	E	K	S	V	D	K	S	I	L	L	P	L	T	P	E	Y	I	G	Y	S	D	V	H	V	E	G	Q	H	F	A	A	V	L	P	H	I	D	E	V	T	H	D	G	E	E	G	F	F	K	Y	R	V
Template Known Secondary structure			G	G	G					S	S													S																S	S	S	S			G	G	G	T	T			S	S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		227	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		D	L	Q	A	L	E	L	A	L	Q	.	E	Y	P	V	K	A	C	W	L	M	T	N	S	Q	N	P	L	G	F	T	L	T	P	Q	K	K	A	Q	L	V	A	L	L	N	Q	Y	N	V	T	L	I	E	D	D	V	Y	S	E	L	Y	F	G	R	E	K	P	L	P	A	K	A	W	D	R	H	D	G	V	L
Query Conservation												.
Alig confidence												.																																																											.	.
Template Conservation																																																																							.	.
Template Sequence		D	F	E	A	L	E	N	L	P	A	L	K	E	G	R	I	G	A	I	C	C	S	R	P	T	N	P	T	G	N	V	L	T	D	E	E	X	A	H	L	A	E	I	A	K	R	Y	D	I	P	L	I	I	D	N	A	Y	G	X	P	F	P	N	I	I	Y	S	D	A	.	.	H	L	N	W	D	N	N	T	I
Template Known Secondary structure								T						T	T									S	S		T	T	T																			T	T								T	T		T	T	T	T			B		S			.	.						T	T
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																							.																																							.
Query SS confidence																							.																																							.
Query Sequence		H	C	S	S	F	S	K	C	L	V	P	G	F	R	I	G	W	V	A	A	G	.	K	H	A	R	K	I	Q	R	L	Q	L	M	S	T	L	S	T	S	S	P	M	Q	L	A	L	V	D	Y	L	S	T	R	R	Y	D	A	H	L	.	R	R	L	R	R	Q	L	A	E	R	K	Q	R	A	W	Q	A	L	L
Query Conservation																							.																																							.
Alig confidence																							.																																							.
Template Conservation
Template Sequence		L	C	F	S	L	S	K	I	G	L	P	G	X	R	T	G	I	I	V	A	D	A	K	V	I	E	A	V	S	A	X	N	A	V	V	N	L	A	P	T	R	F	G	A	A	I	A	T	P	L	V	A	N	D	R	I	K	Q	L	S	D	N	E	I	K	P	F	Y	Q	K	Q	A	T	L	A	V	K	L	L	K
Template Known Secondary structure						S	G	G	G	T		G	G	G																							T	S	S															T	S									T
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		384	.	.	.	.		.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.		.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440							.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure							.																				.																																		.	.	.	.	.	.
Query SS confidence							.																				.																																		.	.	.	.	.	.
Query Sequence		R	Y	L	P	A	.	E	V	K	I	H	H	N	D	S	G	Y	F	L	W	L	E	L	P	E	.	P	L	D	A	G	E	L	S	L	A	A	L	T	H	H	I	S	I	A	P	G	K	M	F	S	T	G	E	N	W	S	R	F	.	.	.	.	.	.	F	R	F	N	T	A	W	Q	W	G	E	R	E	E	Q
Query Conservation							.																				.																																		.	.	.	.	.	.
Alig confidence							.																				.																																		.	.	.	.	.	.								.
Template Conservation																																																																										.
Template Sequence		Q	A	L	G	D	Y	P	L	X	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	S	T	L	D	L	Y	E	R	L	K	A	K	G	T	L	I	V	P	S	E	Y	F	F	P	G	V	D	V	S	D	Y	Q	H	A	H	E	C	I	R	X	S	I	A	A	.	D	E	Q	T	L	I	D
Template Known Secondary structure				S	S	S	S	S								B	S	S							T	T		S	S												T	T						G	G	G	S		T	T	S			T	T		G	G	G	G	S						S		S	.
Template Predicted Secondary structure																																																																										.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.
		456	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	K	Q	L	G	K	L	I	Q	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	K	V	I	G	E	V	V	R	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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