Job Description P77730 Confidence 100.00% Date Thu Jan 5 12:32:10 GMT 2012 Rank 44 Aligned Residues 349 % Identity 18% Template c3ezsB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution Resolution 2.19 Å

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		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		M	L	Q	A	S	R	D	P	S	V	V	P	F	A	S	A	F	P	D	P	R	L	F	P	L	Q	Q	L	N	R	S	L	A	Q	V	S	K	T	A	T	A	M	S	V	I	E	N	L	P	P	G	N	A	E	L	R	Q	A	I	A	R	R	Y	A	L	Q	.	G	I	T	I	S	P	D	E	I	V	I	T	A
Query Conservation																																																																				.
Alig confidence																										.	.	.	.	.	.																																					.
Template Conservation																										.	.	.	.	.	.
Template Sequence		L	K	E	I	T	P	K	K	R	G	L	D	L	G	I	G	E	P	Q	F	E	T	P	K	.	.	.	.	.	.	F	I	Q	D	A	L	K	N	H	T	H	S	L	N	I	Y	P	K	S	A	F	E	E	S	L	R	A	A	Q	R	G	F	F	K	R	R	F	K	I	E	L	K	E	N	E	L	I	S	T	L
Template Known Secondary structure			T	T				S	S				B					S			S					.	.	.	.	.	.								T	T	G	G	G	G	G	S				T	T																		S					G	G	G					S
Template Predicted Secondary structure																										.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.							.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		G	A	L	E	A	L	N	L	S	L	Q	A	V	T	.	.	E	P	G	D	W	V	I	V	E	N	P	C	F	Y	G	A	L	Q	A	L	E	R	L	R	L	K	A	L	S	V	A	T	D	V	K	E	G	I	D	L	Q	A	L	E	L	A	L	Q	E	Y	P	V	K	A	C	W	L	M	T	N	S	Q	N	P
Query Conservation																.	.
Alig confidence																.	.																																																				.	.	.
Template Conservation																																																																					.	.	.
Template Sequence		G	S	R	E	V	L	F	N	F	P	S	F	V	L	F	D	Y	Q	N	P	T	I	A	Y	P	N	P	F	Y	Q	I	Y	E	G	A	A	K	F	I	K	A	K	S	L	L	X	P	L	T	K	E	N	D	F	T	P	S	L	N	E	K	E	L	Q	E	V	D	.	.	.	L	V	I	L	N	S	P	N	N	P
Template Known Secondary structure		S	S												T	T	T		S	S								S			T									T	T										G	G	G	T	T													S	.	.	.						S	S		T	T
Template Predicted Secondary structure																																																																					.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.						.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.																				.
Query SS confidence																																														.	.	.	.	.																				.
Query Sequence		L	G	F	T	L	T	P	Q	K	K	A	Q	L	V	A	L	L	N	Q	Y	N	V	T	L	I	E	D	D	V	Y	S	E	L	Y	F	G	R	E	K	P	L	P	A	K	.	.	.	.	.	A	W	D	R	H	D	G	V	L	H	C	S	S	F	S	K	C	L	V	.	P	G	F	R	I	G	W	V	A	A	G
Query Conservation																																														.	.	.	.	.																				.
Alig confidence																																														.	.	.	.	.																				.
Template Conservation
Template Sequence		T	G	R	T	L	S	L	E	E	L	I	S	W	V	K	L	A	L	K	H	D	F	I	L	I	N	D	E	C	Y	S	E	I	Y	E	N	T	P	P	P	S	L	L	E	A	C	X	L	A	G	N	E	A	F	K	N	V	L	V	I	H	S	L	S	K	R	S	S	A	P	G	L	R	S	G	F	I	A	G	D
Template Known Secondary structure		T																			T	T								T	T	T	T		B	S	S	S												T	T		T	T		T	T							S					T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
			327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	K	H	A	R	K	I	Q	R	L	Q	L	M	S	T	L	S	T	S	S	P	M	Q	L	A	L	V	D	Y	L	S	T	R	R	Y	D	A	H	L	R	R	L	R	R	Q	L	A	E	R	K	Q	R	A	W	Q	A	L	L	R	Y	L	P	A	E	V	K	I	H	H	N	D	S	G	Y	F	L	W	L	E	L
Query Conservation		.
Alig confidence		.																																.	.	.																												.	.	.	.	.	.	.
Template Conservation																																		.	.	.																												.	.	.	.	.	.	.
Template Sequence		S	R	L	L	E	K	Y	K	A	F	R	A	Y	L	G	Y	T	S	A	N	A	I	Q	K	A	S	E	A	A	W	L	D	.	.	.	D	R	H	A	E	F	F	R	N	I	Y	A	N	N	L	K	L	A	R	K	I	F	K	N	T	L	I	.	.	.	.	.	.	.	Y	P	Y	S	F	Y	V	Y	L	P	V
Template Known Secondary structure																																		.	.	.	S																					S	T	T				.	.	.	.	.	.	.		S	B	S	S
Template Predicted Secondary structure																																		.	.	.																												.	.	.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.								.	.	.	.	.	310	.	.	.	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.		.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		P	E	P	L	D	A	G	E	L	S	L	A	A	L	T	H	.	H	I	S	I	A	P	G	K	M	F	S	T	G	E	N	W	S	R	F	F	R	F	N	T	A	W	Q	W	G	E	R	E	E	Q	A	V	K	Q	L	G	K	L	I	Q	E	R
Query Conservation																		.
Alig confidence			.	.	.													.																											.
Template Conservation			.	.	.																																								.
Template Sequence		Q	.	.	.	N	G	E	N	F	A	K	T	L	Y	Q	N	E	G	I	I	T	L	P	A	L	Y	L	G	R	N	R	I	G	A	D	Y	V	R	L	A	L	V	Y	.	D	T	P	L	L	E	K	P	L	E	I	I	E	T	Y	R	E	N	H
Template Known Secondary structure		S	.	.	.																B				G	G	G	G		S	T	T	T	T	T	T								S	.																		T
Template Predicted Secondary structure			.	.	.																																								.
Template SS confidence
		316				.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions