Job Description P77730 Confidence 99.80% Date Thu Jan 5 12:32:10 GMT 2012 Rank 203 Aligned Residues 342 % Identity 15% Template c3a8uX_ PDB info PDB header:transferase Chain: X: PDB Molecule:omega-amino acid--pyruvate aminotransferase; PDBTitle: crystal structure of omega-amino acid:pyruvate aminotransferase Resolution 1.40 Å

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		106	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		V	P	F	A	S	A	F	P	D	P	R	L	F	P	.	L	Q	Q	L	N	R	S	L	A	Q	V	S	K	T	A	T	A	M	S	V	I	E	N	L	P	P	G	N	A	E	L	R	Q	A	I	A	R	R	Y	A	L	Q	G	I	T	I	S	P	D	E	I	V	I	T	A	G	A	L	E	A	L	N	L	S	L
Query Conservation																.
Alig confidence																.																																								.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		Y	D	S	L	S	G	L	W	T	C	G	A	G	H	T	R	K	E	I	Q	E	A	V	A	K	Q	L	S	T	L	D	Y	S	P	G	F	Q	Y	G	H	P	L	S	F	Q	L	A	E	K	I	T	D	L	T	.	.	.	.	.	P	G	N	L	N	H	V	F	F	T	D	S	G	S	E	C	A	L	T	A	V
Template Known Secondary structure				T	T					T		T	T		B	S												T	T	T		S				S	S	S															T	T	S	.	.	.	.	.	S	T	T								S	S
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.						.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		185	.	.									.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.														.	.	.	.	.	.	.	220	.	.	.	.	.																	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	V	.	.	.	.	.	.	.	.	T	E	P	G	D	W	V	I	V	E	N	P	C	F	Y	G	A	L	Q	A	L	E	R	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	A	L	S	V	A	T	D	V	K	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D
Query Conservation					.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	M	V	R	A	Y	W	R	L	K	G	Q	A	T	K	T	K	M	I	G	R	A	R	G	Y	H	G	V	N	I	A	G	T	S	L	G	G	V	N	G	N	R	K	L	F	G	Q	P	M	Q	D	V	D	H	L	P	H	T	L	L	A	S	N	A	Y	S	R	G	M	P	K	E	G	G	I	A	L	A	D	E
Template Known Secondary structure											T	T		T	T								T	T					S	S														T	T	T				S		S										G	G	G	T	T		S	S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	A	L	E	L	A	L	Q	E	Y	P	V	K	A	C	W	L	M	T	N	S	Q	N	P	L	G	F	T	L	T	P	Q	K	K	A	Q	L	V	A	L	L	N	Q	Y	N	V	T	L	I	E	D	D	V	Y	S	E	L	Y	F	G	R	E	K	P	L	P	A	K	A	W	D	R	H	D	G	V	L	H	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	K	L	I	E	L	H	D	A	S	N	I	A	A	V	F	V	E	P	L	A	G	S	A	G	V	L	V	P	P	E	G	Y	L	K	R	N	R	E	I	C	N	Q	H	N	I	L	L	V	F	D	E	V	I	T	G	F	G	R	T	G	S	M	F	G	A	D	S	F	G	V	T	P	D	L	M	C	I	A
Template Known Secondary structure											G	G	G								S	S	B	T	T	T	T		B				T	T													T								T	T	T	T	T	T	T	T	S	S	S	S						T				S
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.											340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		S	S	F	S	K	C	L	V	P	G	F	R	I	G	W	V	A	A	G	K	H	A	R	K	I	Q	R	L	Q	L	M	S	.	.	.	.	.	.	.	.	.	.	T	L	S	T	S	S	P	M	Q	L	A	L	V	D	Y	L	S	T	R	R	Y	D	A	H	L	R	R	L	R	R	Q	L	A	E	R	K	Q	R
Query Conservation																																		.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.																					.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation											.	.	.																																															.	.	.	.
Template Sequence		K	Q	V	T	N	G	A	I	P	.	.	.	M	G	A	V	I	A	S	T	E	I	Y	Q	T	F	M	N	Q	P	T	P	E	Y	A	V	E	F	P	H	G	Y	T	Y	S	A	H	P	V	A	C	A	A	G	L	A	A	L	.	.	.	.	C	L	L	Q	K	E	N	L	V	Q	S	V	A	E	V	A	P	H
Template Known Secondary structure		G	G	G	G	T	T	S	S		.	.	.																T		S	S		T	T	S		S	S					T	T	T	T													.	.	.	.						T	T
Template Predicted Secondary structure											.	.	.																																															.	.	.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.				.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.					.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.						410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.		.	.	.	450	.
Predicted Secondary structure																																		.	.	.	.	.																																						.
Query SS confidence																																		.	.	.	.	.																																						.
Query Sequence		A	W	Q	A	L	L	R	Y	L	P	A	E	V	K	I	H	H	N	D	S	G	Y	F	L	W	L	E	L	P	E	P	L	.	.	.	.	.	D	A	G	E	L	S	L	A	A	L	T	H	H	I	S	I	A	P	G	K	M	F	S	T	G	E	N	W	S	R	F	F	R	F	N	T	A	.	W	Q	W	G	E
Query Conservation																																		.	.	.	.	.																																						.
Alig confidence																																		.	.	.	.	.																				.	.	.	.	.	.	.	.	.										.
Template Conservation																																																										.	.	.	.	.	.	.	.	.
Template Sequence		F	E	K	A	L	H	G	I	K	G	A	K	N	V	I	D	I	R	N	F	G	L	A	G	A	I	Q	I	A	P	R	D	G	D	A	I	V	R	P	F	E	A	G	M	A	L	W	K	A	G	F	Y	V	R	F	G	.	.	.	.	.	.	.	.	.	G	D	T	L	Q	F	G	P	T	F	N	S	K	P	Q
Template Known Secondary structure								T	T	T	T	S	T	T								T	T									B	T	T	B	S	S														T							.	.	.	.	.	.	.	.	.	T	T								T	T
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.										.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	E	Q	A	V	K	Q	L	G	K	L	I	Q	E	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	D	R	L	F	D	A	V	G	E	V	L	N	K	L	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions