Job Description P77730 Confidence 99.83% Date Thu Jan 5 12:32:10 GMT 2012 Rank 189 Aligned Residues 344 % Identity 10% Template c2okkA_ PDB info PDB header:lyase Chain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65) Resolution 2.30 Å

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		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																																					.																										.	.	.
Query SS confidence																																																					.																										.	.	.
Query Sequence		A	F	P	D	P	R	L	F	P	L	Q	Q	L	N	R	S	L	A	Q	V	S	K	T	A	T	A	M	S	V	I	E	N	L	P	P	G	N	A	E	L	R	Q	A	I	A	R	R	Y	A	L	Q	.	G	I	T	I	S	P	D	E	I	V	I	T	A	G	A	L	E	A	L	N	L	S	L	Q	A	.	.	.
Query Conservation																																																					.																										.	.	.
Alig confidence																						.	.	.																													.																										.	.	.
Template Conservation																						.	.	.
Template Sequence		N	Q	L	S	T	G	L	D	M	V	G	L	A	A	D	W	L	T	S	T	.	.	.	A	N	T	N	M	F	T	Y	E	I	A	P	V	F	V	L	L	E	Y	V	T	L	K	K	M	R	E	I	I	G	W	P	G	G	S	G	D	G	I	F	S	P	G	G	A	I	S	N	M	Y	A	M	M	I	A	R	F
Template Known Secondary structure		S	S	S	S																	.	.	.					S	S		T	T	T																				T		G	G	G		S						S	S
Template Predicted Secondary structure																						.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
													187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.					.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																												.	.	.																													.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																												.	.	.																													.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	V	T	E	P	G	D	W	V	I	V	E	N	P	C	F	Y	G	A	L	Q	A	L	E	R	L	R	L	.	.	.	K	A	L	S	V	A	T	D	V	K	E	G	I	D	L	Q	A	L	E	L	A	L	Q	E	Y	P	V	K	.	.	.	.	A	C	W	L	M	T	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																												.	.	.																													.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																												.	.	.																													.	.	.	.
Template Conservation
Template Sequence		K	M	F	P	E	V	K	E	K	G	M	A	A	L	P	R	L	I	A	F	T	S	E	H	S	H	F	S	L	K	K	G	A	A	A	L	G	I	G	T	D	S	V	I	L	I	K	C	D	E	R	G	K	M	I	P	S	D	L	E	R	R	I	L	E	A	K	Q	K	G	F	V	P	F	L	V	S	A	T	A
Template Known Secondary structure					T	T						G	G	G	S									T	T	S		T									T	T	S		G	G	G						B		T	T	S		B															T	T										B
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	N	P	L	G	F	T	L	T	P	Q	K	K	A	Q	L	V	A	L	L	N	Q	Y	N	V	T	L	I	E	D	D	V	Y	S	E	L	Y	F	G	R	E	K	P	L	P	A	K	A	W	D	R	H	D	G	V	L	H	C	S	S	F	S	K	C	L	V	P	G	F	R	I	G	W	V	A	A	G	K	H
Query Conservation
Alig confidence												.	.	.																																																			.
Template Conservation												.	.	.																																																			.
Template Sequence		G	T	T	V	Y	G	A	F	D	P	.	.	.	L	L	A	V	A	D	I	C	K	K	Y	K	I	W	M	H	V	D	A	A	W	G	G	G	L	L	M	S	R	K	H	K	W	K	L	S	G	V	E	R	A	N	S	V	T	W	N	P	H	M	.	M	G	V	P	L	Q	C	S	A	L	L	V	R	E	E	G
Template Known Secondary structure		S		T	T	T			B			.	.	.												T								T	T	G	G	G	G	G	G		T	T	T	G	G	G	G	T	T	G	G	G		S									.				S	S								S	S	T	T
Template Predicted Secondary structure												.	.	.																																																			.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.				.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.		.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		329	330	.	.	.	.	.	.								.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.				.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.																																																										.	.	.
Query SS confidence										.	.	.	.	.	.	.																																																										.	.	.
Query Sequence		A	R	K	I	Q	R	L	Q	.	.	.	.	.	.	.	L	M	S	T	L	S	T	S	S	P	M	Q	L	A	L	V	D	Y	L	S	T	R	R	Y	D	A	H	L	R	R	L	R	R	Q	L	A	E	R	K	Q	R	A	W	Q	A	L	L	R	Y	L	P	A	E	V	K	I	H	.	.	.	H	N	D	S	G
Query Conservation										.	.	.	.	.	.	.																																																										.	.	.
Alig confidence										.	.	.	.	.	.	.																																																		.	.							.	.	.
Template Conservation																																																																		.	.
Template Sequence		L	M	Q	N	C	N	Q	M	H	D	L	S	Y	D	T	G	D	K	A	L	Q	C	G	R	H	V	D	V	F	K	L	W	L	M	W	R	A	K	G	T	T	G	F	E	A	H	V	D	K	C	L	E	L	A	E	Y	L	Y	N	I	I	K	N	R	.	.	E	G	Y	E	M	V	F	D	G	K	P	Q	H	T
Template Known Secondary structure												G	G	G			G	G	G	S	S		S	S																																								T	S	.	.	T	T				S	S	S	S			S	S	S
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.			.	.	480	.	.	.	.	.	.	.	.	.	490	.
		399	400	.	.	.	.	.	.	.	.	.	410													.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.			.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Query Sequence		Y	F	L	W	L	E	L	P	E	P	L	D	.	.	.	.	.	.	.	.	.	.	.	.	A	G	E	L	S	L	A	A	L	T	H	H	I	S	I	A	P	G	K	M	F	S	T	G	E	N	W	S	R	F	F	R	F	N	T	A	.	.	W	Q	W	G	E	R	E	E	Q	A	V	K	Q	L	G	K	L	I
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.													.	.
Template Conservation																																															.	.	.
Template Sequence		N	V	C	F	W	Y	I	P	P	S	L	R	T	L	E	E	R	M	S	R	L	S	K	V	A	P	V	I	K	A	R	M	M	E	Y	G	T	T	M	V	S	Y	Q	P	L	.	.	.	G	D	K	V	N	F	F	R	M	V	I	S	N	P	A	A	T	H	Q	D	I	D	F	L	I	E	E	I	E	R	L	G
Template Known Secondary structure										T	T	T	T	T									T	T													T	S									.	.	.	T	T												T	T
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.				.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.
		465	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		583	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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