Job Description P77730 Confidence 99.80% Date Thu Jan 5 12:32:10 GMT 2012 Rank 205 Aligned Residues 329 % Identity 16% Template c2e7uA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from2 thermus thermophilus hb8 Resolution 1.90 Å

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		105	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		V	V	P	F	A	S	A	F	P	D	P	R	L	F	.	P	L	Q	Q	L	N	R	S	L	A	Q	V	S	K	T	A	T	A	M	S	V	I	E	N	L	P	P	G	N	A	E	L	R	Q	A	I	A	R	R	Y	A	L	Q	G	I	T	I	S	P	D	E	I	V	I	T	A	G	A	L	E	A	L	N	L	S
Query Conservation																.
Alig confidence																.																	.	.	.																									.	.	.	.	.	.
Template Conservation																																	.	.	.																									.	.	.	.	.	.
Template Sequence		Y	L	D	Y	V	M	S	W	G	P	L	I	L	G	H	A	H	P	K	V	L	A	R	V	R	E	T	L	E	R	G	.	.	.	L	T	F	G	A	P	S	P	L	E	V	A	L	A	K	K	V	K	R	A	Y	P	F	V	.	.	.	.	.	.	D	L	V	R	F	V	N	S	G	T	E	A	T	M	S	A
Template Known Secondary structure					S	S	G	G	G	T	T		T	T		B	T														T		.	.	.	S			S	S																	T	T		.	.	.	.	.	.							S	S
Template Predicted Secondary structure																																	.	.	.																									.	.	.	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.							.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		184	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.																					.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure								.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query SS confidence								.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query Sequence		L	Q	A	V	T	E	.	.	P	G	D	W	V	I	V	E	N	P	C	F	Y	G	A	L	Q	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	L	R	L	K	A	L	S	V	A	T	D	V	K	E	G	I	D	L	Q	A	L	E	L	A	L	Q	E	Y	P	V	.
Query Conservation								.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Alig confidence								.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.															.
Template Conservation																																																														.	.	.	.	.
Template Sequence		L	R	L	A	R	G	Y	T	G	R	P	Y	I	V	K	F	R	G	N	Y	H	G	H	A	D	G	L	L	V	E	A	G	S	G	A	L	T	L	G	V	P	S	S	A	G	V	P	E	E	Y	A	K	L	T	L	V	L	E	Y	N	.	.	.	.	.	D	P	E	G	L	R	E	V	L	K	R	R	G	E	E
Template Known Secondary structure																		T	T							G	G	G	S					S	S	S			B				S	S	T	T							T	T						T	T	.	.	.	.	.													G	G	G
Template Predicted Secondary structure																																																														.	.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.						.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	C	W	L	M	T	N	S	Q	N	P	L	G	F	T	L	T	P	Q	K	K	A	Q	L	V	A	L	L	N	Q	Y	N	V	T	L	I	E	D	D	V	Y	S	E	L	Y	F	G	R	E	K	P	L	P	A	K	A	W	D	R	H	D	G	V	L	H	C	S	S	F	S	K	C	L	V	P	G	F	R	I
Query Conservation
Alig confidence																																																			.	.	.	.	.
Template Conservation																																																			.	.	.	.	.
Template Sequence		I	A	A	I	I	F	E	P	V	V	G	N	A	G	V	L	V	P	T	E	D	F	L	K	A	L	H	E	A	K	A	Y	G	V	L	L	I	A	D	E	V	M	T	G	F	R	L	A	F	.	.	.	.	.	G	G	A	T	E	L	L	G	L	K	P	D	L	V	T	L	G	K	I	L	G	G	G	L	P	A
Template Known Secondary structure									S	S	B		T	T	S		B													G	G	G	G	T								T	T	T	T	T	T	S	S	T	.	.	.	.	.	T							T				S						G	G	G	G	T	T	S	S
Template Predicted Secondary structure																																																			.	.	.	.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.					.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.																									.
Query SS confidence																		.	.	.	.																									.
Query Sequence		G	W	V	A	A	G	K	H	A	R	K	I	Q	R	L	Q	.	.	.	.	L	M	S	T	L	S	T	S	S	P	M	Q	L	A	L	V	D	Y	L	S	T	R	R	Y	.	D	A	H	L	R	R	L	R	R	Q	L	A	E	R	K	Q	R	A	W	Q	A	L	L	R	Y	L	P	A	E	V	K	I	H	H	N
Query Conservation																		.	.	.	.																									.
Alig confidence																		.	.	.	.																									.																										.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		A	A	Y	A	G	R	R	E	I	M	E	K	V	A	P	L	G	P	V	Y	Q	A	G	T	L	S	G	N	P	L	A	M	A	A	G	L	A	T	L	E	L	L	E	E	N	P	G	Y	Y	A	Y	L	E	D	L	G	A	R	L	E	A	G	L	K	E	V	L	K	E	K	.	.	.	G	L	P	H	T	V	N
Template Known Secondary structure												T	T	B	T	T	T	S	S	B					T	T		S																			T																								T	.	.	.	T
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.				.	.	.	.	.	350	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410														.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	S	G	Y	F	L	W	L	E	L	P	E	P	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	E	L	S	L	A	A	L	T	H	H	I	S	I	A	P	G	K	M	F	S	T	G	E	N	W	S	R	F	F	R	F	N	T	A	W	Q	W	G	E	R	E	E	Q	A	V	K	Q	L	G	K
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.							.
Template Conservation																																																			.	.	.	.	.	.	.	.							.
Template Sequence		R	V	G	S	M	I	T	V	F	F	T	E	G	P	V	V	T	F	Q	D	A	R	R	T	D	T	E	L	F	K	R	F	F	H	G	L	L	D	R	G	I	Y	W	P	P	S	N	F	E	.	.	.	.	.	.	.	.	A	A	F	L	S	V	.	A	H	R	E	E	D	V	E	K	T	L	E	A	L	R	K
Template Known Secondary structure				T	T						S	S	S	S				S					T	T	S														T	T	T					S	S	S	S	S	.	.	.	.	.	.	.	.						T	.	T
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.							.
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400									.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		463	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		423	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions