Job Description D9IX93 Confidence 100.00% Date Wed Jan 25 15:20:09 GMT 2012 Rank 3 Aligned Residues 477 % Identity 26% Template c3tpaA_ PDB info PDB header:heme binding protein Chain: A: PDB Molecule:heme-binding protein a; PDBTitle: structure of hbpa2 from haemophilus parasuis Resolution 2.00 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																												.																.																																			.	.	.
Query SS confidence																												.																.																																			.	.	.
Query Sequence		K	D	V	V	V	A	V	G	S	N	F	T	T	L	D	P	Y	D	A	N	D	T	L	S	Q	A	.	V	A	K	S	F	Y	Q	G	L	F	G	L	D	K	E	.	M	K	L	K	N	V	L	A	E	S	Y	T	V	S	D	D	G	I	T	Y	T	V	K	L	R	E	G	I	K	F	Q	D	G	T	.	.	.
Query Conservation																												.																.																																			.	.	.
Alig confidence																												.																.																																			.	.	.
Template Conservation
Template Sequence		N	T	L	V	N	C	I	A	T	A	P	M	K	L	S	P	A	I	T	N	D	A	N	D	F	N	A	S	S	Q	Q	V	Y	N	R	L	V	E	F	K	A	G	K	I	E	V	E	P	G	L	A	E	R	W	E	I	S	E	D	G	L	V	Y	T	F	Y	L	R	Q	N	V	K	F	H	S	N	K	T	F	S
Template Known Secondary structure									S	S			S		S		G	G	G		S	S	G	G	G	G	G	G	T								S					T	T	S	S	S				S	S								T	T	S									S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
					103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.												.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	D	F	N	A	A	A	V	K	A	N	L	D	R	A	S	D	P	A	N	H	L	K	R	Y	N	L	.	.	.	.	.	.	.	.	.	.	.	Y	K	N	I	A	K	T	E	A	I	D	P	T	T	V	K	I	T	L	K	Q	P	F	S	A	F	I	N	I	L	A	H	P	A	T	A	M	I	S	P
Query Conservation		.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	T	R	P	L	N	A	D	D	V	V	F	S	F	Q	R	Q	A	D	K	N	H	P	Y	H	N	V	S	A	G	T	Y	F	Y	F	N	W	M	N	L	P	S	I	L	K	S	V	E	K	V	D	D	Y	T	V	K	I	T	L	N	K	P	N	T	P	F	I	T	T	V	A	M	D	F	L	S	I	Y	S	K
Template Known Secondary structure			S	S																	T	T	S	T	T	T	T	G	G	G									T	T													T	T							S	S			T	T					T	T	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		169	170	.	.	.						.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure							.	.	.	.	.
Query SS confidence							.	.	.	.	.
Query Sequence		A	A	L	E	K	.	.	.	.	.	Y	G	K	E	I	G	F	Y	P	V	G	T	G	P	Y	E	L	D	T	W	N	Q	T	D	F	V	K	V	K	K	F	A	G	Y	W	Q	P	G	L	P	K	L	D	S	I	T	W	R	P	V	A	D	N	N	T	R	A	A	M	L	Q	T	G	E	A	Q	F	A	F	P
Query Conservation							.	.	.	.	.
Alig confidence							.	.	.	.	.																																				.
Template Conservation																																															.
Template Sequence		E	Y	A	D	Q	L	L	A	Q	G	K	P	E	T	L	D	Q	Q	P	I	G	T	G	P	F	I	F	Q	T	N	Q	T	D	H	A	V	R	Y	T	A	N	V	D	Y	W	.	K	G	K	A	D	I	E	R	L	I	F	S	I	T	P	D	A	G	T	R	Y	A	K	L	K	A	G	E	C	D	V	I	D	F
Template Known Secondary structure										T	T		T	T					S				S	S	S					S	S			T	T								T	T		T	.	T				S		S																			T	T	S		S			S	S
Template Predicted Secondary structure																																															.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		I	P	Y	E	Q	A	T	L	L	E	K	N	K	N	I	E	L	M	A	S	P	S	I	M	Q	R	Y	I	S	M	N	V	T	Q	K	P	F	D	N	P	K	V	R	E	A	L	N	Y	A	I	N	R	P	A	L	V	K	V	A	F	A	G	Y	A	T	P	A	T	G	V	V	P	P	S	I	A	Y	A	Q	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		P	N	I	S	D	I	A	Q	M	K	K	D	P	Q	I	N	L	L	E	R	E	G	L	N	L	A	Y	I	G	L	N	T	T	K	P	E	L	N	N	V	K	V	R	Q	A	L	H	H	A	T	D	K	K	A	I	V	D	A	V	Y	Q	G	G	G	T	V	A	T	N	P	F	P	D	A	V	L	G	Y	N	P
Template Known Secondary structure											T	T		T	T									S									T	T	S	T	T	T	T	S										T												T	T	S					S	S	S	S		T	T	S	T	T			T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.					.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		S	Y	K	P	W	P	Y	D	P	V	K	A	R	E	L	L	K	E	A	G	Y	P	N	G	F	.	.	.	.	S	T	T	L	W	S	S	H	N	H	S	T	A	Q	K	V	L	Q	F	T	Q	Q	Q	L	A	Q	V	G	I	K	A	Q	V	T	A	M	D	A	G	Q	R	A	A	E	V	E	G	K	G	Q	K
Query Conservation																											.	.	.	.
Alig confidence																											.	.	.	.																																																.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		H	L	P	Q	Y	E	F	N	L	E	K	A	K	A	L	L	A	E	A	G	Y	P	N	G	F	E	T	E	I	W	V	Q	P	V	V	R	P	S	N	P	N	P	R	R	T	A	E	I	I	Q	A	D	W	A	K	I	G	V	K	A	K	L	V	T	H	E	W	A	D	F	N	K	R	T	R	E	.	.	.	.
Template Known Secondary structure		T																		T	T		T	T										S	S		B	T	T	B	S																T	T																			T	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	G	V	R	M	F	Y	T	G	W	S	A	S	T	G	E	A	D	W	A	L	S	P	L	F	A	S	Q	N	W	P	P	T	L	F	N	T	A	F	Y	S	N	K	Q	V	D	D	F	L	A	Q	A	L	K	T	N	D	P	A	E	K	T	R	L	Y	K	A	A	Q	D	I	I	W	Q	E	S	P	W	I
Query Conservation
Alig confidence		.																															.	.
Template Conservation		.																															.	.
Template Sequence		.	G	E	F	A	A	G	T	Y	G	W	T	S	R	N	G	D	P	D	N	F	L	F	P	L	F	S	Q	A	N	I	.	.	P	G	T	N	Y	S	R	W	T	D	E	K	F	E	A	L	L	A	S	A	A	Q	I	Q	D	T	Q	T	R	A	K	L	Y	Q	Q	A	V	E	I	F	Q	Q	N	S	P	I	I
Template Known Secondary structure		.	T			S									S	S			T										G	G	G	T	.	.	T	T	T		T	T																T																							S
Template Predicted Secondary structure		.																															.	.
Template SS confidence
			403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.			.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	V	V	E	K	L	V	S	A	H	S	K	N	L	T	G	F	W	I	M	P	D	T	G	F	S	F	E	D	A	D	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	F	A	H	S	I	N	Y	V	P	L	N	K	R	V	Q	G	F	V	Q	N	P	F	G	Y	T	A	F	Y	G	V	S	L	K
Template Known Secondary structure														T	T			S					T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.