Job Description D9IX93 Confidence 100.00% Date Wed Jan 25 15:20:09 GMT 2012 Rank 11 Aligned Residues 462 % Identity 21% Template c3rqtA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: 1.5 angstrom crystal structure of the complex of ligand binding2 component of abc-type import system from staphylococcus aureus with3 nickel and two histidines Resolution 1.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	D	V	V	V	A	V	G	S	N	F	T	T	L	D	P	Y	D	A	N	D	T	L	S	Q	A	V	A	K	S	F	Y	Q	G	L	F	G	L	D	K	E	M	K	L	K	N	V	L	A	E	S	Y	T	V	S	D	D	G	I	T	Y	T	V	K	L	R	E	G	I	K	F	Q	D	G	T	D	F	N	A
Query Conservation
Alig confidence																						.	.	.	.																																	.
Template Conservation																						.	.	.	.																																	.
Template Sequence		G	K	D	L	N	I	S	L	P	L	K	T	K	S	I	A	P	Y	E	T	.	.	.	.	D	V	P	V	K	I	G	A	A	E	S	L	F	K	T	N	D	Q	G	K	I	E	K	A	L	V	K	S	Y	H	Q	P	.	N	D	T	T	L	D	I	E	L	K	D	N	I	K	F	Q	N	G	Q	K	L	T	A
Template Known Secondary structure										S	S			S				T	T	T		.	.	.	.	S					T	T	S		B		S					T	T	S					S	S								.		T	T								S	S		B		T	T	S		B
Template Predicted Secondary structure																						.	.	.	.																																	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.					.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	K	A	N	L	D	R	A	S	D	P	A	N	H	L	K	R	Y	N	L	Y	K	N	I	A	K	T	E	A	I	D	P	T	T	V	K	I	T	L	K	Q	P	F	S	A	F	I	N	I	L	A	H	P	A	T	A	M	I	S	P	A	A	L	E	K	Y	G	K	E	I	G	F	Y	P	V	G	T	G
Query Conservation
Alig confidence																			.	.	.	.																																										.	.	.	.
Template Conservation																			.	.	.	.																																										.	.	.	.
Template Sequence		E	K	V	K	S	S	L	E	N	S	X	K	K	S	D	L	V	.	.	.	.	K	Y	S	L	P	I	S	S	I	T	A	K	G	Q	K	L	T	I	K	T	N	S	A	Y	P	E	L	V	S	E	L	A	N	P	F	X	A	I	Y	D	T	.	.	.	.	D	A	K	S	D	V	N	Q	T	P	V	G	T	G
Template Known Secondary structure																			.	.	.	.													T	T							S	S			T	T					T	T	S	G	G	G		B			T	.	.	.	.	T		S	S		T	T	T	S				S	S
Template Predicted Secondary structure																			.	.	.	.																																										.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.					.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.					.	.	140	.	.	.	.	.	.	.	.	.	150	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	E	L	D	T	W	N	Q	T	D	F	V	K	V	K	K	F	A	G	Y	W	Q	P	G	L	P	K	L	D	S	I	T	W	R	P	V	A	D	N	N	T	R	A	A	M	L	Q	T	G	E	A	Q	F	A	F	P	I	P	Y	E	Q	A	T	L	L	E	K	N	K	N	I	E	L	M	A	S	P	S	I
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		P	Y	Q	I	K	D	Y	K	Q	S	R	K	I	S	L	S	N	F	K	D	Y	W	.	Q	G	K	P	K	L	D	H	I	T	V	T	Y	Q	E	D	G	N	N	R	V	R	N	L	E	S	Q	K	D	D	L	I	T	D	V	P	V	N	K	V	Q	D	I	E	N	N	Q	N	L	K	V	S	K	E	S	G	F
Template Known Secondary structure		S								T	T	T								T	T		T	.	T	S			S		S																			T	T	S		S				S			G	G	G								T	T
Template Predicted Secondary structure																								.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	R	Y	I	S	M	N	V	T	Q	K	P	F	D	N	P	K	V	R	E	A	L	N	Y	A	I	N	R	P	A	L	V	K	V	A	F	A	G	Y	A	T	P	A	T	G	V	V	P	P	S	I	A	Y	A	Q	S	Y	K	P	W	P	Y	D	P	V	K	A	R	E	L	L	K	E	A	G	Y	P	N	G
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		R	T	S	L	L	X	Y	N	H	T	N	.	K	K	X	T	K	S	V	R	E	A	L	D	H	I	I	D	R	Q	G	I	A	D	H	I	Y	Q	G	Y	A	K	P	A	T	S	P	F	N	D	K	I	P	Y	I	K	E	P	K	L	T	K	Q	N	I	E	Q	A	K	X	L	L	A	K	D	G	Y	T	K	E
Template Known Secondary structure										T	T	S	.	T	T																						T	S	T	T	S					S	S	S	S		T	T	S	T	T																				T	T	T			S	S
Template Predicted Secondary structure													.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		347			.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		F	.	.	S	T	T	L	W	S	S	H	N	H	S	T	A	Q	K	V	L	Q	F	T	Q	Q	Q	L	A	Q	V	G	I	K	A	Q	V	T	A	M	D	A	G	Q	R	A	A	E	V	E	G	K	G	Q	K	E	S	G	V	R	M	F	Y	T	G	W	S	A	S	T	G	E	A	D	W	A	L	S	P	L	F
Query Conservation			.	.
Alig confidence			.	.																																											.	.	.	.	.
Template Conservation																																															.	.	.	.	.
Template Sequence		H	P	L	K	I	K	L	I	T	Y	D	G	R	P	E	L	S	K	I	A	Q	V	L	Q	S	D	A	K	K	A	N	I	E	I	D	I	K	S	V	D	D	I	E	G	Y	.	.	.	.	.	L	K	D	R	S	A	W	D	A	T	X	Y	S	F	G	T	I	P	R	G	D	T	G	Y	F	F	N	Q	A	Y
Template Known Secondary structure		S										S	S	S	T															T	T	T									S						.	.	.	.	.	T	T		T	T	S		S								S		T	T	S		T								T
Template Predicted Secondary structure																																															.	.	.	.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.						.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	Q	N	W	P	P	T	L	F	N	T	A	F	Y	S	N	K	Q	V	D	D	F	L	A	Q	A	L	K	T	N	D	P	A	E	K	T	R	L	Y	K	A	A	Q	D	I	I	W	Q	E	S	P	W	I	P	L	V	V	E	K	L	V	S	A	H	S	K	N	L	T	G	F	W	I	M	P	D	T	G	F
Query Conservation
Alig confidence								.	.	.	.
Template Conservation								.	.	.	.
Template Sequence		K	K	D	G	A	I	.	.	.	.	N	K	G	D	Y	N	N	S	N	V	D	D	L	I	N	Q	L	N	H	T	V	D	V	K	E	R	H	N	I	S	N	D	I	I	K	L	S	S	R	D	V	P	N	S	Y	I	A	Y	N	D	Q	I	V	A	A	N	S	K	V	K	N	Y	K	V	T	P	E	G	I	Y
Template Known Secondary structure		S	T	T		T	T	.	.	.	.		T	T																T																							S															T	T								T	T	S
Template Predicted Secondary structure								.	.	.	.
Template SS confidence
		385	.	.	.	.	390					.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
		505	.	.		.	.	510	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		S	F	E	.	D	A	D	L	Q
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		L	I	D	Y	R	T	T	I	E
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		461	.	.	.	.	.	.	.	.