Job Description D9IX93 Confidence 100.00% Date Wed Jan 25 15:20:09 GMT 2012 Rank 21 Aligned Residues 209 % Identity 27% Template c3o6pA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:peptide abc transporter, peptide-binding protein; PDBTitle: crystal structure of peptide abc transporter, peptide-binding protein Resolution 1.65 Å

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		265	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.										.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure													.	.																																																	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																																																	.	.	.	.	.	.	.	.	.
Query Sequence		S	I	M	Q	R	Y	I	S	M	N	V	.	.	T	Q	K	P	F	D	N	P	K	V	R	E	A	L	N	Y	A	I	N	R	P	A	L	V	K	V	A	F	A	G	Y	A	T	P	A	T	G	V	V	P	P	S	I	A	Y	A	Q	S	.	.	.	.	.	.	.	.	.	Y	K	P	W	P	Y	D	P	V	K
Query Conservation													.	.																																																	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																																																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	S	T	Q	Y	X	E	L	N	Q	R	D	E	K	S	P	F	R	N	A	N	L	R	K	A	I	S	Y	S	I	D	R	K	A	L	V	E	S	I	L	G	D	G	S	I	E	P	N	G	L	V	P	A	D	X	A	K	D	P	S	G	G	K	D	F	A	K	E	A	G	S	Q	I	E	Y	D	T	K	K
Template Known Secondary structure														S	T	T		G	G	G											T									T	T	T		S	S		B			S	S	S	S		T	T	S		B		S	S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.			.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.																									.	.
Query SS confidence																			.	.																									.	.
Query Sequence		A	R	E	L	L	K	E	A	G	Y	P	N	G	F	S	T	T	.	.	L	W	S	S	H	N	H	S	T	A	Q	K	V	L	Q	F	T	Q	Q	Q	L	A	Q	V	.	.	G	I	K	A	Q	V	T	A	M	D	A	G	Q	R	A	A	E	V	E	G	K	G	Q	K	E	S	G	V	R	M	F	Y	T	G	W
Query Conservation																			.	.																									.	.
Alig confidence																			.	.																									.	.																					.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.
Template Sequence		A	K	E	Y	W	E	K	A	K	K	E	L	G	I	S	T	L	T	X	D	I	L	S	S	D	A	D	S	S	K	K	T	V	E	F	V	Q	G	S	I	Q	D	A	L	D	G	V	K	V	T	V	S	P	V	P	F	S	V	R	L	D	R	S	N	K	.	.	.	.	.	G	D	F	D	A	V	I	G	G	W
Template Known Secondary structure														T		S											S																		S	T	T																				.	.	.	.	.	T			S
Template Predicted Secondary structure																																																																			.	.	.	.	.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.						.	.	.	.	.	450	.	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.			.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		S	A	S	T	G	E	A	D	W	A	L	S	P	L	F	A	S	Q	N	W	P	P	T	L	F	N	T	A	F	Y	S	N	K	Q	V	D	D	F	L	A	Q	A	L	K	.	.	T	N	D	P	A	E	K	T	R	L	Y	K	A	A	Q	D	I	I	W	Q	E	S	P	W	I	P	L	V	V	E
Query Conservation																																														.	.
Alig confidence																.	.	.	.	.																										.	.
Template Conservation																.	.	.	.	.
Template Sequence		S	A	D	Y	A	D	P	S	S	F	L	D	L	F	.	.	.	.	.	A	S	D	N	S	Y	N	R	G	R	Y	N	N	A	E	F	D	K	F	V	K	A	A	S	S	A	D	A	T	D	P	E	K	R	W	D	D	X	L	N	A	E	K	T	I	X	G	D	X	G	V	V	P	L	F	Q	K
Template Known Secondary structure				S	S	S		T					G	G	G	.	.	.	.	.	S	T	T		T	T		T	T																S	T	T																					T	T	S	S
Template Predicted Secondary structure																.	.	.	.	.
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.						.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions