Job Description D9IX93 Confidence 100.00% Date Wed Jan 25 15:20:09 GMT 2012 Rank 4 Aligned Residues 478 % Identity 28% Template c3m8uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:heme-binding protein a; PDBTitle: crystal structure of glutathione-binding protein a (gbpa) from2 haemophilus parasuis sh0165 in complex with glutathione disulfide3 (gssg) Resolution 1.85 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																													.																.
Query SS confidence																													.																.
Query Sequence		A	K	D	V	V	V	A	V	G	S	N	F	T	T	L	D	P	Y	D	A	N	D	T	L	S	Q	A	.	V	A	K	S	F	Y	Q	G	L	F	G	L	D	K	E	.	M	K	L	K	N	V	L	A	E	S	Y	T	V	S	D	D	G	I	T	Y	T	V	K	L	R	E	G	I	K	F	Q	D	G	T	D	F
Query Conservation																													.																.
Alig confidence																													.																.
Template Conservation
Template Sequence		D	K	T	F	I	N	C	V	S	R	S	P	T	G	F	S	P	A	L	V	M	D	G	I	S	Y	N	A	S	S	Q	Q	V	Y	N	R	L	V	E	F	K	R	G	S	T	D	I	E	P	A	L	A	E	S	W	T	V	S	D	D	G	L	T	Y	T	F	N	L	R	K	G	V	K	F	H	S	N	K	E	F
Template Known Secondary structure										S	S			S		S		G	G	G										T								S					T	T	S	S					S	S								T	T	S									S	S						B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		105							.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.												.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	.	.	.	.	.	.	A	A	A	V	K	A	N	L	D	R	A	S	D	P	A	N	H	L	K	R	Y	N	.	.	.	.	.	.	.	.	.	.	.	L	Y	K	N	I	A	K	T	E	A	I	D	P	T	T	V	K	I	T	L	K	Q	P	F	S	A	F	I	N	I	L	A	H	P	A	T	A	M	I	S
Query Conservation			.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	P	S	R	D	F	N	A	D	D	V	V	F	S	F	Q	R	Q	L	D	P	N	H	P	Y	H	N	V	S	K	A	T	Y	P	Y	F	K	A	M	K	F	S	T	L	L	K	S	V	E	K	V	D	M	H	T	V	K	I	T	L	N	R	Q	D	A	T	F	L	A	S	L	G	M	D	F	I	S	I	Y	S
Template Known Secondary structure				S	S																	T	T	S	T	T	T	T	G	G	G									T	T													T	T							S	S			T	T					T	T	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		168	.	170	.	.	.						.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure								.	.	.	.	.
Query SS confidence								.	.	.	.	.
Query Sequence		P	A	A	L	E	K	.	.	.	.	.	Y	G	K	E	I	G	F	Y	P	V	G	T	G	P	Y	E	L	D	T	W	N	Q	T	D	F	V	K	V	K	K	F	A	G	Y	W	Q	P	G	L	P	K	L	D	S	I	T	W	R	P	V	A	D	N	N	T	R	A	A	M	L	Q	T	G	E	A	Q	F	A	F
Query Conservation								.	.	.	.	.
Alig confidence								.	.	.	.	.																																				.
Template Conservation																																																.
Template Sequence		A	E	Y	A	D	K	M	L	A	A	G	K	P	E	T	I	D	T	T	P	I	G	T	G	P	F	L	F	A	G	Y	Q	V	D	Q	K	S	R	Y	L	A	H	K	E	Y	W	.	K	G	K	A	D	I	D	R	L	I	F	E	I	V	P	D	A	T	A	R	Y	A	K	L	Q	A	G	A	C	D	L	I	D
Template Known Secondary structure											T	T		T	T					S				S	S	S								T	T	T								T	T		T	.	T				S		S																				T	S		S			S
Template Predicted Secondary structure																																																.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	P	Y	E	Q	A	T	L	L	E	K	N	K	N	I	E	L	M	A	S	P	S	I	M	Q	R	Y	I	S	M	N	V	T	Q	K	P	F	D	N	P	K	V	R	E	A	L	N	Y	A	I	N	R	P	A	L	V	K	V	A	F	A	G	Y	A	T	P	A	T	G	V	V	P	P	S	I	A	Y	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	P	N	A	A	D	L	E	K	M	K	T	D	P	K	V	N	L	H	S	Q	S	G	L	N	I	A	Y	I	A	F	N	T	E	K	A	P	F	D	N	V	K	V	R	Q	A	L	N	Y	A	V	D	K	N	A	I	I	D	A	V	Y	R	G	A	G	V	A	A	K	N	P	L	P	P	T	I	W	G	Y	N
Template Known Secondary structure		S										T	S		T	T									S									T	T	S	T	T	T	T	S										T										T	T	T	T	S					S	S	S	S		T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
			323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.					.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure		.																									.	.	.	.
Query SS confidence		.																									.	.	.	.
Query Sequence		.	S	Y	K	P	W	P	Y	D	P	V	K	A	R	E	L	L	K	E	A	G	Y	P	N	G	.	.	.	.	F	S	T	T	L	W	S	S	H	N	H	S	T	A	Q	K	V	L	Q	F	T	Q	Q	Q	L	A	Q	V	G	I	K	A	Q	V	T	A	M	D	A	G	Q	R	A	A	E	V	E	G	K	G	Q
Query Conservation		.																									.	.	.	.
Alig confidence		.																									.	.	.	.																																																	.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		N	E	I	T	G	Y	E	Y	S	P	E	K	A	K	Q	L	L	K	E	A	G	F	E	N	G	F	E	T	D	I	W	V	Q	P	V	V	R	A	S	N	P	N	P	R	R	M	A	E	L	V	Q	S	D	W	E	K	V	G	V	K	S	K	L	V	S	Y	E	W	G	D	Y	I	K	R	T	K	A	.	.	.
Template Known Secondary structure		T	T																		T	T		T	T										S	S		B	T	T	B	S															T	T	T																			T	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	S	G	V	R	M	F	Y	T	G	W	S	A	S	T	G	E	A	D	W	A	L	S	P	L	F	A	S	Q	N	W	P	P	T	L	F	N	T	A	F	Y	S	N	K	Q	V	D	D	F	L	A	Q	A	L	K	T	N	D	P	A	E	K	T	R	L	Y	K	A	A	Q	D	I	I	W	Q	E	S	P	W
Query Conservation
Alig confidence		.	.																															.	.
Template Conservation		.	.																															.	.
Template Sequence		.	.	G	E	L	T	A	G	T	Y	G	W	S	G	D	N	G	D	P	D	N	F	L	S	P	L	F	G	S	E	N	V	.	.	G	N	S	N	Y	A	R	F	K	N	P	E	L	D	A	L	L	H	K	A	V	G	L	S	D	K	A	E	R	A	K	I	Y	E	Q	A	Q	V	L	L	K	E	Q	A	P	W
Template Known Secondary structure		.	.	T			S									S	S	S		T										G	G	G	B	.	.	T	T	T	B	T	T																T		S																					S
Template Predicted Secondary structure		.	.																															.	.
Template SS confidence
				420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.			450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	L	V	V	E	K	L	V	S	A	H	S	K	N	L	T	G	F	W	I	M	P	D	T	G	F	S	F	E	D	A	D	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	N	V	A	H	S	I	N	F	A	P	T	S	K	R	V	Q	D	Y	K	Q	S	P	F	G	Y	T	Y	L	Y	G	T	K	L	A
Template Known Secondary structure															T	T			S					T	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530