Job Description D9IX93 Confidence 100.00% Date Wed Jan 25 15:20:09 GMT 2012 Rank 19 Aligned Residues 213 % Identity 22% Template c3lvuB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of abc transporter, periplasmic substrate-binding2 protein spo2066 from silicibacter pomeroyi Resolution 1.79 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	I	M	Q	R	Y	I	S	M	N	V	T	Q	K	P	F	D	N	P	K	V	R	E	A	L	N	Y	A	I	N	R	P	A	L	V	K	V	A	F	A	G	Y	A	T	P	A	T	G	V	V	P	P	S	I	A	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	A	G	X	T	G	F	V	I	N	T	R	R	A	P	F	D	D	W	R	L	R	E	A	L	L	L	A	F	N	F	E	F	I	N	D	T	V	T	G	G	V	X	P	R	I	T	S	Y	F	S	G	T	D	L	A	Y	R	P	G	T	A	S	G	R	E	A	E	L	L	A	P	F	A	A	D	L	P	P	G
Template Known Secondary structure												T	T	S	T	T	T	T	S																						T	T		S					S	T	T	T	T	S	T	T	S			S	S	S										G	G	G	T	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
												322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.												.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	Q	S	Y	K	P	W	P	Y	D	P	V	K	A	R	E	L	L	K	E	A	G	Y	P	.	.	.	.	.	.	.	.	.	.	.	N	G	F	S	T	T	L	W	S	S	H	N	H	S	T	A	Q	K	V	L	Q	F	T	Q	Q	Q	L	A	Q	V	G	I	K	A	Q	V
Query Conservation		.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	E	G	Y	A	L	P	Q	G	D	G	T	A	R	N	R	T	N	L	R	R	A	A	Q	F	L	E	Q	A	G	F	R	I	E	Q	G	Q	L	L	G	P	D	G	A	P	L	A	L	R	F	L	L	R	Q	G	D	S	D	X	Q	T	V	L	E	I	Y	T	R	A	L	E	R	L	G	I	A	A	Q	I
Template Known Secondary structure													S	S	S	S															T	T					T	T					T	T	S	S	B									T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	M	D	A	G	Q	R	A	A	E	V	E	G	K	G	Q	K	E	S	G	V	R	M	F	Y	T	G	W	S	A	S	T	G	E	A	D	W	A	L	S	P	L	F	A	S	Q	N	W	P	P	T	L	F	N	T	A	F	Y	S	N	K	Q	V	D	D	F	L	A	Q	A	L	K	T	N	D	P	A	E	K
Query Conservation
Alig confidence																.	.	.	.	.
Template Conservation																.	.	.	.	.
Template Sequence		E	K	V	D	N	A	Q	Y	T	A	R	V	A	E	.	.	.	.	.	L	D	F	D	L	T	P	F	R	R	D	L	S	L	S	P	G	N	E	Q	R	L	Y	W	G	S	H	S	A	G	Q	P	G	T	R	N	L	X	G	A	A	S	P	A	I	D	A	X	I	D	R	X	L	A	A	T	T	E	D	E	L
Template Known Secondary structure															T	.	.	.	.	.	T			S										S	S			T								G	G	G	T	T		T	T		S		T	T																			S
Template Predicted Secondary structure																.	.	.	.	.
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.						.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	L	Y	K	A	A	Q	D	I	I	W	Q	E	S	P	W	I	P	L	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	A	T	R	A	L	D	R	V	L	T	A	G	R	Y	V	I	P	I	W	R
Template Known Secondary structure															T	T
Template Predicted Secondary structure
Template SS confidence
		547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions