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Job DescriptionD9IX93
Confidence100.00%DateWed Jan 25 15:20:09 GMT 2012
Rank6Aligned Residues491
% Identity22%Templatec2wokA_
PDB info PDB header:peptide binding protein/peptideChain: A: PDB Molecule:clavulanic acid biosynthesis oligopeptide PDBTitle: clavulanic acid biosynthesis oligopeptide2 binding protein 2 complexed with bradykinin
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20...... ...30.........40.........50.........60......... 70........ .80....
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Query Sequence  ALMASCAFA. . . . . . . AKDVVVAVGSNFTTLDPYDANDTLSQAVAKSFYQGLFGLDKEM. . . . . KLKNVLAES. YTVSDD
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Template Sequence  GWDAGVGALVNPSRRRGGTLRLVSSADVDSLDPARTYYVWVWLLQRLLNRTLMAYPTDPGPAGLVPAPDLAEGPGEVSDG
Template Known Secondary structure 
TTTTSSS
BS





SSS

S
SSTTS





S

S
SSGGGGS
SSBSSS
GG
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   16...20.........30.........40.........50.........60.........70.........80.........90.....
 
   85....90.........100.........110.........120......... 130.........140......
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Query Sequence  GITYTVKLREGIKFQDGTDFNAAAVKANLDRASDPANHLKRYNLY. . . . . . . . . . . . . . . . . . KNIAKTEAIDPTTVKIT
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Template Sequence  GRTWTYRLRRGLRYDDGTPITSDDVRHAVQRVFAQDVLPGGPTYLIPLLDDPERPYPGPYRTDEPLRSVLTPDEHTIVFR
Template Known Secondary structure  GTB
SS
B
TTS
B

TT
TTTSTTS

T
BTTB



TTT

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TTTT
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   96...100.........110.........120.........130.........140.........150.........160.........170.....
 
   147..150.........160.........170.........180.........190.........200.........210 .........220..
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Query Sequence  LKQPFSAFINILAHPATAMISPAALEKYGKEIGFYPVGTGPYELDTWNQTDFVKVKKFAGYWQP. . . . GLPKLDSITWRP
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Template Sequence  LTRPFSDFDHLMAQPCAAPVPRR. . SDTGADYGRDPRSSGPYRVARHEPDTLLHLERNPHWDRATDPIRPALPDRVELTI
Template Known Secondary structure 
SS

TTTSGGGS


GG..G

GGGGGGS



SSTTT
TT

GGG
SS




S
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   176...180.........190........ .200.........210.........220.........230.........240.........250...
 
   223......230.........240.........250....... ..260.........270.........280.........290.......
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Query Sequence  VADNNTRAAMLQTGEAQFAFPIPYEQATLLEKNKN. . . . . IELMASPSIMQRYISMNVTQKPFDNPKVREALNYAINRPA
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Template Sequence  GLDVDVLDARLIAGEFDINLEGRGLQHAAQRRATADEVLRSHTDNPRTSFLHFVAMQPHIPPFDNVHVRRAVQYAADKIL
Template Known Secondary structure 


TTSSSSS





TT


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   254.....260.........270.........280.........290.........300.........310.........320.........330...
 
   298.300...... ...310.........320...... ...330.........340.........350.........360.........
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Query Sequence  LVKVAFAGY. . ATPATGVVPPSIAYAQSYKP. . . . . . WPYDPVKARELLKEAGYPNGFSTTLWSSHNHSTAQKVLQFTQQ
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Template Sequence  LQDARGGPVNGGDLTTALFPPTLPAHQDLDLYPTGPDLRGDLDAARAELAAAGLPDGFRAVIGT. . QRGKFRLVADAVVE
Template Known Secondary structure  TTTTTSS

SSSS
TTSTT




SS


TTSS

TT
TT
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TT
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   334.....340.........350.........360.........370.........380.........390....... ..400.........410.
 
   370.........380.........390....... ..400.........410.........420......... 430.........440.....
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Query Sequence  QLAQVGIKAQVTAMDAGQRAAEVEGKGQ. . KESGVRMFYTGWSASTGEADWALSPLFASQNW. . PPTLFNTAFYSNKQVD
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Template Sequence  SLARVGIELTVKELDVATYFSLGAGHPETVREHGLGLLVTDWGADFPTEYGFLAPLVDGRQIKRNGGNWNLPELDDPEVN
Template Known Secondary structure  TTT

STT




TT
TT

SSSS
GGG

TTS



TT



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   412.......420.........430.........440.........450.........460.........470.........480.........490.
 
   446...450.........460.........470.........480.........490.........500 .........510..
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Query Sequence  DFLAQALKTNDPAEKTRLYKAAQDIIWQESPWIPLVVEKLVSAHSKNLTGFWIMP. DTGFSFEDADLQ
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Template Sequence  ALIDETLHTTDPAARAELWRAVERRVMEHAVLLPLVHDKTLHFRNPWVTNVYVHPAFGLYDIQAMGLA
Template Known Secondary structure  T


T




TTSB
B
TTTSSB
GGG

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   492.......500.........510.........520.........530.........540.........550.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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