Job Description D9IX93 Confidence 100.00% Date Wed Jan 25 15:20:09 GMT 2012 Rank 18 Aligned Residues 475 % Identity 16% Template c2d5wA_ PDB info PDB header:peptide binding protein Chain: A: PDB Molecule:peptide abc transporter, peptide-binding protein; PDBTitle: the crystal structure of oligopeptide binding protein from thermus2 thermophilus hb8 complexed with pentapeptide Resolution 1.30 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.														80	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	F	A	A	K	D	V	V	V	A	V	G	S	N	F	T	T	L	D	P	Y	.	.	.	.	D	A	N	D	T	L	S	Q	A	V	A	K	S	F	Y	Q	G	L	F	G	L	D	K	E	M	K	L	K	N	V	L	A	E	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	S	D	D	G	I
Query Conservation																							.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	P	Q	D	N	S	L	V	I	G	A	S	Q	E	P	R	V	L	A	G	D	F	L	R	V	I	S	N	Q	A	I	K	S	E	I	E	Q	Y	L	F	A	P	F	I	G	F	N	A	D	S	Q	N	F	P	V	L	A	T	E	V	P	T	L	E	N	G	R	L	R	V	T	D	I	G	G	G	K	K	R	L
Template Known Secondary structure						T							S				S	S		S	S		T	T		S	S	B																S					T	T	S					S	S	B	S	S				T	T	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	T	V	K	L	R	E	G	I	K	F	Q	D	G	T	D	F	N	A	A	A	V	K	A	N	L	D	R	A	S	D	P	A	N	H	L	K	R	Y	N	L	Y	K	N	I	A	K	T	E	A	I	D	P	T	T	V	K	I	T	L	K	Q	P	F	S	A	F	I	N	I	L	A	H	P	A	T	A	M	I
Query Conservation
Alig confidence																																													.																								.	.	.
Template Conservation																																													.																								.	.	.
Template Sequence		E	M	D	I	T	I	R	P	D	A	K	W	S	D	G	R	P	I	T	T	E	D	V	A	F	Y	F	E	V	G	K	A	K	G	M	P	V	L	N	P	D	F	W	.	E	R	V	N	V	R	I	K	D	A	R	N	F	T	L	I	F	E	P	A	Y	Y	Y	.	.	.	D	T	Y	G	P	I	N	T	Y	A
Template Known Secondary structure							B		T	T		B		T	T	S		B															S	T	T				S						.									S	S	S							S	S			T	T	.	.	.	T	T		S		B
Template Predicted Secondary structure																																													.																								.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.				.	.	150	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.																																			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Query Sequence		S	P	A	A	L	E	K	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	E	I	G	F	Y	P	V	G	T	G	P	Y	E	L	D	T	W	N	Q	T	D	F	V	K	V	K	K	F	A	G	Y	W	.	.	.	.
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Template Conservation
Template Sequence		P	K	H	I	M	G	P	E	W	E	R	V	K	A	A	A	R	G	L	D	P	D	K	D	A	E	K	L	N	E	L	Y	R	N	F	F	L	K	F	A	T	P	Q	A	L	N	R	G	A	M	V	Y	S	G	P	F	K	L	K	R	W	V	P	G	N	S	I	E	M	E	R	N	P	N	F	P	I	K	P	E
Template Known Secondary structure																		T	T			T	T	T	T														T	T	T	S						T	T						S	S								T	T	T								T	T						T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.							250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.																															.	.	.
Query SS confidence																																											.	.	.	.	.	.																															.	.	.
Query Sequence		Q	P	G	L	P	K	L	D	S	I	T	W	R	P	V	A	D	N	N	T	R	A	A	M	L	Q	T	G	E	A	Q	F	A	F	P	I	P	Y	E	Q	A	.	.	.	.	.	.	T	L	L	E	K	N	K	N	I	E	L	M	A	S	P	S	I	M	Q	R	Y	I	S	M	N	V	T	Q	K	P	.	.	.
Query Conservation																																											.	.	.	.	.	.																															.	.	.
Alig confidence																																											.	.	.	.	.	.																															.	.	.
Template Conservation
Template Sequence		G	G	E	S	K	Y	V	Q	K	V	V	Y	R	F	I	Q	N	T	N	S	L	L	V	A	V	I	G	G	S	I	D	A	T	S	S	V	S	L	T	F	D	Q	G	R	S	P	Q	L	V	R	R	A	P	G	R	F	D	I	W	F	V	P	G	A	I	W	E	H	I	D	I	N	K	F	E	N	C	Q	V	V
Template Known Secondary structure		T		G	G	G	S		S								S	S											T			S				S	S	S							T						T	T		T	T	T																				T	T	S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
						280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																									.																											.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																									.																											.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	F	D	N	P	K	V	R	E	A	L	N	Y	A	I	N	R	P	A	L	V	K	V	A	F	A	G	Y	A	T	P	A	T	G	V	V	P	P	S	I	A	.	Y	A	Q	S	Y	K	P	W	P	Y	D	P	V	K	A	R	E	L	L	K	E	A	G	Y	P	N	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.																																									.																											.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																									.																											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	D	L	G	L	N	D	K	R	T	R	Q	A	I	L	H	A	L	N	R	E	G	L	V	K	A	F	F	D	G	L	Q	P	V	A	H	T	W	I	A	P	V	N	P	L	F	N	P	N	V	K	K	Y	E	F	D	L	K	K	A	E	A	L	L	A	E	M	G	W	R	K	G	P	D	G	I	L	Q	R	T
Template Known Secondary structure					T	T	T	S										T	S											T	T	S	S		B		S	S	S	S		T	T	S	T	T			T	T	S																	T	T					T	T	S
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
								346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.		.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																													.																									.
Query SS confidence		.	.	.	.	.	.																																													.																									.
Query Sequence		.	.	.	.	.	.	G	F	S	T	T	L	W	S	S	H	N	H	S	T	A	Q	K	V	L	Q	F	T	Q	Q	Q	L	A	Q	V	G	I	K	A	Q	V	T	A	M	D	A	G	Q	R	A	.	A	E	V	E	G	K	G	Q	K	E	S	G	V	R	M	F	Y	T	G	W	S	A	S	T	.	G	E	A	D
Query Conservation		.	.	.	.	.	.																																													.																									.
Alig confidence		.	.	.	.	.	.																																													.																									.
Template Conservation
Template Sequence		V	N	G	R	T	V	R	F	E	I	E	Y	V	T	T	A	G	N	V	V	R	E	R	T	Q	Q	F	F	A	E	D	L	K	K	I	G	I	A	V	K	I	N	N	A	P	S	A	V	V	F	A	D	E	F	I	Q	R	A	S	E	C	K	W	T	G	M	F	E	F	A	W	V	S	N	L	Q	E	D	G	S
Template Known Secondary structure			T	T												B	T	T																		T	T								B						T	B					T		G	G	G	T	S	S		S										S					G
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
		418	.	420	.	.	.	.	.	.	.	.	.	430	.								.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure																.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.
Query Sequence		W	A	L	S	P	L	F	A	S	Q	N	W	P	P	.	.	.	.	.	.	.	T	L	F	N	T	A	F	Y	S	N	K	Q	V	D	D	F	L	A	Q	A	L	K	T	N	D	P	A	E	K	T	R	L	Y	K	A	A	Q	D	I	I	W	Q	E	S	P	W	I	P	L	V	V	E	K	L	V	S	A	H	S
Query Conservation																.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	F	Q	Y	K	N	L	N	T	G	A	I	M	V	P	T	K	E	N	N	Y	Q	G	Q	N	I	G	G	W	R	N	D	E	F	D	R	L	T	S	Q	A	V	L	E	F	D	P	E	R	R	K	Q	L	F	W	R	A	Q	E	I	W	A	E	E	L	P	A	L	P	L	Y	F	R	A	N	P	Y	V	V	R
Template Known Secondary structure		G	G		S	B		T	T	T			B		S		S	G	G	G	T	T		S	S		T	T															T	T			S																				S
Template Predicted Secondary structure
Template SS confidence
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
		491	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	L	T	G	F	W	I	M	P	D	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G	L	V	N	Y	V	A	S	A	Y	S
Template Known Secondary structure		T	T			S					S	S	T
Template Predicted Secondary structure
Template SS confidence
		558	.	560	.	.	.	.	.	.	.	.	.