Job Description D9IX93 Confidence 100.00% Date Wed Jan 25 15:20:09 GMT 2012 Rank 12 Aligned Residues 468 % Identity 20% Template c1ztyA_ PDB info PDB header:sugar binding protein, signaling protein Chain: A: PDB Molecule:chitin oligosaccharide binding protein; PDBTitle: crystal structure of the chitin oligasaccharide binding2 protein Resolution 2.30 Å

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		27	.	.	30	.	.	.				.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure									.	.	.																																					.	.
Query SS confidence									.	.	.																																					.	.
Query Sequence		A	K	D	V	V	V	A	.	.	.	V	G	S	N	F	T	T	L	D	P	Y	D	A	N	D	T	L	S	Q	A	V	A	K	S	F	Y	Q	G	L	F	G	L	D	K	E	M	.	.	K	L	K	N	V	L	A	E	S	Y	T	V	S	D	D	G	I	T	Y	T	V	K	L	R	E	G	I	K	F	Q	D	G
Query Conservation									.	.	.																																					.	.
Alig confidence									.	.	.																			.	.																	.	.
Template Conservation																														.	.
Template Sequence		R	S	E	L	T	I	V	P	D	F	Y	P	T	M	V	R	N	F	N	P	Y	L	A	T	N	L	R	T	.	.	T	T	D	F	I	Y	E	P	L	V	V	F	N	E	M	K	G	N	T	P	V	F	R	L	A	E	S	Y	K	M	A	D	D	L	M	S	V	T	F	D	I	R	K	G	V	K	W	S	D	G
Template Known Secondary structure									S				S	S							T	T		S	S	S		T	T	.	.	S	B	T	T	T	B			S					G	G	G	T	T					S	S								T	T	S	S								T	T		B		T	T	S
Template Predicted Secondary structure																														.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		T	D	F	N	A	A	A	V	K	A	N	L	D	R	A	S	D	P	A	N	H	L	K	R	Y	N	L	Y	K	N	I	A	K	T	E	A	I	D	P	T	T	V	K	I	T	L	K	Q	P	F	S	A	F	I	N	I	L	A	H	P	A	T	A	M	I	S	P	A	A	L	E	K	Y	G	K	E	I	G	F	.
Query Conservation																																																																																	.
Alig confidence																											.																																	.	.																				.
Template Conservation																											.																																	.	.
Template Sequence		E	A	F	T	A	D	D	V	V	Y	S	F	G	L	L	K	A	K	P	E	L	D	Q	R	G	.	I	N	K	W	V	T	S	V	E	K	V	D	E	Y	K	V	R	F	R	L	S	E	A	N	S	N	V	P	Y	E	I	S	.	.	L	I	P	I	V	A	E	H	V	W	K	D	V	K	D	P	T	T	F	T
Template Known Secondary structure			B																S	G	G	G		T	T		.	G	G	G	T									T	T							S	S			T	T							.	.	T	S									T	T		S		T	T	T
Template Predicted Secondary structure																											.																																	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
				181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	Y	P	V	G	T	G	P	Y	E	L	D	T	W	N	Q	T	D	F	V	K	V	K	K	F	A	G	Y	W	Q	P	G	L	P	K	L	D	S	I	T	W	R	P	V	A	D	N	N	T	R	A	A	M	L	Q	T	G	E	A	Q	F	A	F	P	I	P	Y	E	Q	A	T	L	L	E	K	N	K	N	I
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		N	E	N	P	V	G	T	G	P	F	T	V	I	D	T	F	T	P	Q	L	Y	I	Q	C	R	N	P	N	Y	W	D	A	A	N	L	E	V	D	C	L	R	V	P	Q	I	A	N	N	D	Q	L	L	G	K	I	V	N	S	E	L	D	W	T	S	S	F	V	P	D	I	D	R	T	Y	A	A	A	N	P	N
Template Known Secondary structure			S	S				S	S	S									S	S								T	T		T	T	G	G	G													S										T	T			S							T	T					T	G	G	G		T	T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.							.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.																																																	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.																																																	.	.	.	.	.	.
Query Sequence		E	L	M	A	S	P	S	I	M	Q	R	Y	I	S	M	N	V	T	Q	K	.	.	.	.	.	.	P	F	D	N	P	K	V	R	E	A	L	N	Y	A	I	N	R	P	A	L	V	K	V	A	F	A	G	Y	A	T	P	A	T	G	V	V	P	P	S	I	A	Y	A	Q	S	Y	K	P	.	.	.	.	.	.
Query Conservation																						.	.	.	.	.	.																																																	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.																																																	.	.	.	.	.	.
Template Conservation
Template Sequence		H	H	Y	W	Y	P	A	A	G	T	Q	A	F	M	V	N	F	K	N	P	D	P	A	K	K	E	A	L	D	N	V	D	F	R	R	A	F	S	M	A	L	D	R	Q	T	I	I	D	I	A	F	Y	G	S	G	T	V	N	D	F	A	S	G	L	G	Y	A	F	E	A	W	S	D	E	A	T	H	K	K	Y
Template Known Secondary structure																		T	T		S	S								T																						T	T	T		S						T	T				G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
					327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.														.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	W	P	Y	D	P	V	K	A	R	E	L	L	K	E	A	G	Y	P	N	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	S	T	T	L	W	S	S	H	N	H	S	T	A	Q	K	V	L	Q	F	T	Q	Q	Q	L	A	Q	V	G	I	K	A	Q	V	T	A	M	D	A	G	Q	R	A	A
Query Conservation		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	G	F	N	T	Y	D	V	E	G	S	K	K	L	L	A	K	A	G	F	K	D	V	N	G	D	G	F	V	E	T	P	S	G	K	S	F	E	L	L	I	Q	S	P	N	G	W	T	D	F	N	N	T	V	Q	L	A	V	E	Q	L	Q	E	V	G	I	K	A	K	A	R	T	P	E	F	A	V	Y	N	Q
Template Known Secondary structure			G	G	G	S														T					S	S	S	S	S				T	T	S											T	T																	T	T	T
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.				.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		E	V	E	G	K	G	Q	K	E	S	G	V	R	M	F	Y	T	G	W	S	A	S	T	G	E	A	D	W	A	L	S	P	L	F	A	S	.	.	.	Q	N	W	P	P	T	L	F	N	T	A	F	Y	S	N	K	Q	V	D	D	F	L	A	Q	A	L	K	T	N	D	P	A	E	K	T	R	L	Y	K	A	A
Query Conservation																																						.	.	.
Alig confidence						.	.	.	.	.														.														.	.	.
Template Conservation						.	.	.	.	.														.
Template Sequence		A	M	L	E	.	.	.	.	.	G	T	Y	D	V	A	Y	T	N	Y	F	H	G	.	A	D	P	F	T	Y	W	N	S	G	Y	N	S	A	L	Q	S	G	D	G	M	P	R	F	A	M	H	Y	F	T	D	K	K	L	D	G	L	L	D	S	F	Y	K	T	A	D	K	N	E	Q	L	A	I	A	H	G	I
Template Known Secondary structure					T	.	.	.	.	.	T			S										.	S	S	T										G	G	G	G	S	S	T	T			S	T	T	T	T												T	T	T	T	S
Template Predicted Secondary structure						.	.	.	.	.														.
Template SS confidence
		396	.	.	.						400	.	.	.	.	.	.	.	.	.	410	.	.		.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490		.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		Q	D	I	I	W	Q	E	S	P	W	I	P	L	V	V	E	K	L	V	S	A	H	S	.	K	N	L	T	G	F	W	I	M	P	D	T	G	F	S
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		Q	K	I	I	A	E	N	Q	V	T	I	P	V	M	S	G	A	W	M	Y	Q	Y	N	T	T	R	F	T	G	W	W	S	E	E	N	P	K	G	R
Template Known Secondary structure									T		S														T	T	T						B	T	T	B			S
Template Predicted Secondary structure
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.