Job Description Q46845 Confidence 100.00% Date Thu Jan 5 12:35:12 GMT 2012 Rank 51 Aligned Residues 199 % Identity 18% Template c1yy7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:stringent starvation protein a; PDBTitle: crystal structure of stringent starvation protein a (sspa),2 an rna polymerase-associated transcription factor Resolution 2.02 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		42	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		K	H	P	L	Q	L	Y	S	L	G	.	T	P	N	G	Q	K	V	T	I	M	L	E	E	L	L	A	L	G	V	T	G	A	E	Y	D	A	W	L	I	R	I	G	D	G	D	Q	F	S	S	G	F	V	E	V	N	P	N	S	K	I	P	A	L	R	D	H	T	H	N	P	P	I	R	V	F	E	S	G	S
Query Conservation												.
Alig confidence												.															.	.	.	.	.	.												.	.	.																								.	.	.	.
Template Conservation																											.	.	.	.	.	.												.	.	.																								.	.	.	.
Template Sequence		R	S	V	M	T	L	F	S	G	P	T	D	I	F	S	H	Q	V	R	I	V	L	A	E	K	.	.	.	.	.	.	G	V	S	V	E	I	E	Q	V	E	A	.	.	.	D	N	L	P	Q	D	L	I	D	L	N	P	Y	R	T	V	P	T	L	V	D	R	E	.	.	.	.	L	T	L	Y	E	S	R	I
Template Known Secondary structure		S	S	S							T	T															.	.	.	.	.	.	T										T	.	.	.	T	S										T	T			S	S					T	T	.	.	.	.					S
Template Predicted Secondary structure																											.	.	.	.	.	.												.	.	.																								.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.							.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		I	L	L	Y	L	A	E	K	F	G	Y	.	.	F	L	P	Q	D	L	A	K	R	T	E	T	M	N	W	L	F	W	L	Q	G	A	A	P	F	L	G	G	G	F	G	H	F	Y	H	Y	A	P	V	K	I	E	Y	A	I	N	R	F	T	M	E	A	K	R	L	L	D	V	L	D	K	Q	L	A	Q	H	K
Query Conservation													.	.
Alig confidence													.	.																																	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.
Template Sequence		I	M	E	Y	L	D	E	R	F	P	H	P	P	L	M	P	V	Y	P	V	A	R	G	S	S	R	L	M	M	H	R	I	E	H	D	W	Y	S	L	L	Y	K	I	E	Q	.	.	.	.	.	.	.	G	N	A	Q	E	A	E	A	A	R	K	Q	L	R	E	E	L	L	S	I	A	P	V	F	N	E	T	P
Template Known Secondary structure												S	S			S		S	S																		T										.	.	.	.	.	.	.	S																			T	T	T						S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.								120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	A	G	D	E	Y	T	I	A	D	M	A	I	W	P	W	F	G	N	V	V	L	G	G	V	Y	D	A	A	E	F	L	D	A	G	S	Y	K	H	V	Q	R	W	A	K	E	V	G	E	R	P	A	V	K	R	G	R	I	V	N	R	T	N	G	P	L
Query Conservation
Alig confidence																													.	.	.	.	.
Template Conservation																													.	.	.	.	.
Template Sequence		F	F	M	S	E	E	F	S	L	V	D	C	Y	L	A	P	L	L	W	R	L	P	V	L	G	I	E	.	.	.	.	.	F	T	G	A	G	S	K	E	L	K	G	Y	M	T	R	V	F	E	R	D	A	F	L	A	S	L	T	E	A	E	R	E	M	H	L
Template Known Secondary structure		B	T	T	B	S	S														T	G	G	G	G	T			.	.	.	.	.			S	T	T													T	S													G	G	G
Template Predicted Secondary structure																													.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.						.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions