 |
Job Description | P0A809 | Confidence | 94.66% | Date | Thu Jan 5 11:06:34 GMT 2012 |
Rank | 53 | Aligned Residues | 61 |
% Identity | 26% | Template | c2yg8B_ |
PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative; |
PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans
|
Resolution | 2.00 Å |
|
 |
  |   |
60 | . | . | . | . | . | . | . | . | |
. | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|  |  |  | . |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | Y | G | F | N | N | K | Q | E | . |
R | T | L | F | K | E | L | I | K | T | N | G | V | G | P | K | L | A | L | A | I | L | S | G | M | S | A | Q | Q | F | V | N | A | V | E | R | E | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | G | A | L | V | K | L | P | G | I | G | K | K | T | A | E | R | L |
Query Conservation |   |
|
|
|
|   |   |   |   |
| . |
|   |
|
|   |   |
|
|   |
|   |
|
|
|
|
|   |
|
|   |
|
|
|   |   |   |   |   |
|
|   |   |
|
|   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |
|
|
|
|
|
|
|
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |   |
|
|   |   |
|   |   |   | . | . | . | . | . | . |
|   |   |   |   |   |
|   |
|   |
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |
|
|
|   |
|
|
|
|   |
|
Template Sequence |   |
L | P | G | G | V | V | P | A | A | L | L | K | V | S | G | D | D | L | R | G | V | G | L | S | W | A | K | V | R | T | V | Q | A | A | . |
. |
. |
. |
. |
. |
A | A | A | A | V | S | G | Q | I | D | F | A | H | L | S | G | Q | P | D | E | L | V | I | A | E | L | V | Q | L | P | G | I | G | R | W | T | A | E | X | F |
Template Known Secondary structure |   |
S | T | T |
| S |
|  |  |  |  | T | T | S |
|  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  | T | T | S | S |
| G | G | G | G | G | G | S |
|  |  |  |  |  |  |  |  |  | T | S | T | T |
|
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
89 | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | |
|
|
|
|
|
. | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . |
  |
  |   |
125 | . |
Predicted Secondary structure |   |
 |  |
Query SS confidence |   |
|
|
Query Sequence |   |
I | V |
Query Conservation |   |
|
|
Alig confidence |   |
|
|
Template Conservation |   |
|
|
Template Sequence |   |
L | L |
Template Known Secondary structure |   |
 |  |
Template Predicted Secondary structure |   |
 |  |
Template SS confidence |   |
|
|
  |   |
163 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|