 |
Job Description | P0A809 | Confidence | 97.09% | Date | Thu Jan 5 11:06:34 GMT 2012 |
Rank | 33 | Aligned Residues | 53 |
% Identity | 21% | Template | c2ihmA_ |
PDB info |
PDB header:transferase/dna | Chain: A: PDB Molecule:dna polymerase mu; |
PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide
|
Resolution | 2.40 Å |
|
  |   |
75 | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | |
|
|
90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | |
|
|
110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|  |  |  |  |  |  |  | . | . | . |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  | . | . | . |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | I | K | T | N | G | V | G | P | K | L | A | L | A | I | . |
. |
. |
L | S | G | M | S | A | Q | Q | F | V | N | A | V | E | R | E | E | V | G | A | . |
. |
. |
L | V | K | L | P | G | I | G | K | K | T | A | E | R | L | I | V | E | M |
Query Conservation |   |
|
|   |
|   |
|
|
|
|
|   |
|
|   |
| . | . | . |
|
|   |   |   |   |   |
|
|   |   |
|
|   |   |   |
|   |   |   | . | . | . |
|   |   |
|
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
Template Conservation |   |
  |   |   |
|
|
|
|
|   |   |
|
|   |
|
|   |
|   |
|   |
|
|   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |
|
|
|
|
|   |
|   |   |
|   | . |   |   |
Template Sequence |   |
L | H | G | L | P | Y | F | G | E | H | S | T | R | V | I | Q | E | L | L | E | H | G | T | C | E | E | V | K | Q | V | R | C | S | E | R | Y | Q | T | M | K | L | F | T | Q | V | F | G | V | G | V | K | T | A | N | R | W | Y | . |
Q | E |
Template Known Secondary structure |   |
G | T | T |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
|  |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  | T | S | T | T |
|
|  |  |  |  |  |  |  |  | . |  | T |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  | . |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
199 | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | |
. | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|