Job Description P0AF03 Confidence 33.41% Date Thu Jan 5 11:24:45 GMT 2012 Rank 140 Aligned Residues 78 % Identity 14% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.																								.
Query SS confidence																																																.																								.
Query Sequence		N	T	L	R	I	G	L	V	S	I	S	D	R	A	S	S	G	V	Y	Q	D	K	G	I	P	A	L	E	E	W	L	T	S	A	L	T	T	P	F	E	L	E	T	R	L	I	.	P	D	E	Q	A	I	I	E	Q	T	L	C	E	L	V	D	E	M	S	C	H	L	V	.	L	T	T	G	G	T	G	P	A
Query Conservation																																																.																								.
Alig confidence												.	.	.	.	.	.	.	.	.	.																											.																								.
Template Conservation												.	.	.	.	.	.	.	.	.	.
Template Sequence		R	G	Y	K	V	G	V	V	C	S	.	.	.	.	.	.	.	.	.	.	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D	Y	F	K	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E
Template Known Secondary structure		T	T									.	.	.	.	.	.	.	.	.	.			S	S	T											G	G	G	T							T	T																		T	T		S										S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.											.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	D	V	T	P	D	A	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	A	L	I	E	E	M	K	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions