 |
Job Description | P0AF03 | Confidence | 81.05% | Date | Thu Jan 5 11:24:45 GMT 2012 |
Rank | 35 | Aligned Residues | 69 |
% Identity | 20% | Template | c3c5yD_ |
PDB info |
PDB header:isomerase | Chain: D: PDB Molecule:ribose/galactose isomerase; |
PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution
|
Resolution | 1.81 Å |
|
 |
  |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | I | G | L | V | S | I | S | D | R | A | S | S | G | V | Y | Q | D | K | G | I | P | A | L | E | E | W | L | T | S | A | L | T | T | P | F | E | L | E | T | R | L | I | P | D | E | . |
. |
. |
. |
. |
. |
Q | A | I | I | E | Q | T | L | C | E | L | V | D | E | M | S | C | H | L | V | L | T | T | G | G | T | G | P |
Query Conservation |   |
|   |   |
|
|
|
|
|
|   |   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |
|
| . | . | . | . | . | . |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |   |
|
| . | . | . |
|   |   |
|   |
|   |   |
|   |
|   |
|
|   |   |
|
|   |   |
|
|
| . | . |
|
|
|   |
|   |   |
|   |
|   |   |
|   |   |   |
|
|
|   |
|   |   |
|
|   |
|
|   |   |
|   |
|
|
|
|
|   | . |
|
|
|
|   |
Template Sequence |   |
K | I | A | L | I | I | E | N | . |
. |
. |
S | Q | A | A | K | N | A | V | V | H | E | A | L | T | T | V | A | E | P | L | G | H | K | . |
. |
V | F | N | Y | G | X | Y | T | A | E | D | K | A | S | L | T | Y | V | X | N | G | L | L | A | G | I | L | L | N | S | G | A | A | D | F | V | V | T | . |
G | G | T | G | X |
Template Known Secondary structure |   |
 |  |  |  |
|
|
| G | . | . | . | G | G | G | G | G |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G | T |
|  | . | . |  |  |  |
|
|
|
| S | T | T |
| S | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
| S |  |  |  |  | . |
|
|
| S |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  | . | . |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  | . |
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | |
|
|
10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | |
|
. | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | |
. | . | . | . | . |
  |
  |   |
79 |
Predicted Secondary structure |   |
|
Query SS confidence |   |
|
Query Sequence |   |
A |
Query Conservation |   |
|
Alig confidence |   |
|
Template Conservation |   |
|
Template Sequence |   |
G |
Template Known Secondary structure |   |
 |
Template Predicted Secondary structure |   |
 |
Template SS confidence |   |
|
  |   |
77 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|