 |
Job Description | P0AF03 | Confidence | 24.43% | Date | Thu Jan 5 11:24:45 GMT 2012 |
Rank | 180 | Aligned Residues | 61 |
% Identity | 16% | Template | c1qf6A_ |
PDB info |
PDB header:ligase/rna | Chain: A: PDB Molecule:threonyl-trna synthetase; |
PDBTitle: structure of e. coli threonyl-trna synthetase complexed with its2 cognate trna
|
Resolution | 2.90 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | N | T | L | R | I | G | L | V | S | I | S | D | R | A | S | S | G | V | Y | Q | D | K | G | I | P | A | L | E | E | W | L | T | S | A | L | T | T | P | F | E | L | E | T | R | L | I | P | D | E | Q | A | I | I | E | Q | T | L | C | E | L | V | D | E | M | S | C | H | L | V | L | T | T | G |
Query Conservation |   |
  |   |   |
|
|   |   |
|
|
|
|
|
|   |   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|
|   |
|
|
|
|   |   |   |   |   |   | . | . | . | . | . | . |   |
|   |   |
|   |   |   |
|
|   |   |
|
|
|
|   | . | . | . | . | . | . |
|
|   |   |   |   |   |
|   |
|
|
|
|   |
| . |   |   |   |
|   |
|   |   |
|
|
|
|
Template Sequence |   |
L | A | P | V | Q | V | V | I | M | N | I | T | D | S | Q | S | E | . |
. |
. |
. |
. |
. |
Y | V | N | E | L | T | Q | K | L | S | N | A | G | I | R | V | K | . |
. |
. |
. |
. |
. |
A | D | L | R | N | E | K | I | G | F | K | I | R | E | H | . |
T | L | R | R | V | P | Y | M | L | V | C | G |
Template Known Secondary structure |   |
T |
| S | S |
|  |  |  |  |  | S | S |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|  |  | . | . | . | . | . | . |  |  |
|
| S | S |
|  |  |  |  |  |  |  |  | . |  |  | T | T |
| S |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  | . | . | . | . | . | . |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  | . |  |  |
|
|
|
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
537 | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | |
|
|
|
|
|
. | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | |
. | . | . | . | 590 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|