 |
Job Description | P00957 | Confidence | 23.63% | Date | Thu Jan 5 10:57:20 GMT 2012 |
Rank | 129 | Aligned Residues | 110 |
% Identity | 9% | Template | c3ptjA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:upf0603 protein at1g54780, chloroplastic; |
PDBTitle: structural and functional analysis of arabidopsis thaliana thylakoid2 lumen protein attlp18.3
|
Resolution | 2.60 Å |
|
 |
  |   |
755 | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | |
. | . | . | . | . | . | 790 | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | 800 | . | . | . | . | . | . | . | . | . | 810 | . | . | . | . | . | . | . | . | . | 820 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | Q | E | S | A | N | L | S | S | K | A | I | D | V | N | G | V | K | L | L | V | S | E | L | S | G | V | E | P | . |
K | M | L | R | T | M | V | D | D | L | K | N | Q | . |
. |
. |
. |
. |
. |
. |
L | G | S | T | I | I | V | L | A | T | V | V | E | G | K | V | S | L | I | A | G | V | S | K | D | V | T | D | R | V |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |
|   | . |   |   |
|
|   |   |
|   |   |
|   |   |   | . | . | . | . | . | . | . |   |   |   |   |   |
|
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |
|
|
|
|
|
|   |   |   |   |
|   |   |   |
|   | . | . |   |
|   |   |
|
|   |   |
|
Template Sequence |   |
K | S | D | L | K | K | L | L | S | D | L | E | Y | R | K | K | X | R | L | N | F | I | T | V | R | K | L | T | S | K | A | D | A | F | E | Y | A | D | Q | V | L | E | K | W | Y | P | S | X | E | E | G | N | N | K | G | I | V | V | L | I | T | S | Q | K | E | G | A | I | T | . |
. |
G | G | P | A | F | I | E | A | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  | S |
|
| S | S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  | S |
| S |  |  |  |  | T | T |  |  |  |  |  |  |  | T | T | T | T |  |  |  |  |  | . | . |  |
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . | . |  |
|
|
|  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
112 | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | |
|
. | . | . | . | . | . | . | . | . |
  |
  |   |
827 | . | . | 830 | . | . | . | . | . | . | . | . | . | 840 | . | . | . | . | . | . | . | . | . | 850 | . | . | . | . | . | . | . | . | . | 860 | . | . | . | . | . | . | . | . | . | 870 | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | A | G | E | L | I | G | M | V | A | Q | Q | V | G | G | K | G | G | G | R | P | D | M | A | Q | A | G | G | T | D | A | A | A | L | P | A | A | L | A | S | V | K | G | W | V | S | A | K |
Query Conservation |   |
  |
|   |   |
|   |
|   |
|   |   |   |   |
|
|
|
|
|
|
|
|   |   |
|
|
|
|
|   |   |   |   |   |
|   |
|
|
|   |   |
|   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |   |
|   |   |   |   |   | . | . | . | . | . | . |   |
|   |   |   |   | . | . |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
Template Sequence |   |
G | E | N | I | L | D | A | T | V | S | E | N | L | . |
. |
. |
. |
. |
. |
P | V | L | A | T | D | . |
. |
E | K | Y | N | E | A | V | Y | S | S | A | K | R | L | V | A | A | I | D | G | Q |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  | T |  |  | . | . | . | . | . | . |  |  |  |  |  | T | . | . | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
190 | . | . | . | . | . | . | . | . | . | 200 | . | . | |
|
|
|
|
|
. | . | . | . | . | . | |
|
. | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|