Job Description P00957 Confidence 84.76% Date Thu Jan 5 10:57:20 GMT 2012 Rank 26 Aligned Residues 170 % Identity 19% Template c2znjB_ PDB info PDB header:ligase Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of pyrrolysyl-trna synthetase from2 desulfitobacterium hafniense Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30											.	.	.	.	.	.	.	.	.	40	.	.	.															.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	I	R	Q	A	F	L	D	F	F	H	S	K	G	H	Q	V	V	A	S	S	S	L	V	.	.	.	.	.	.	.	.	.	.	P	H	N	D	P	T	L	L	F	T	N	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	N	Q	F	K	D	V	F	L	G	L	D	K	R	N	Y	S	R
Query Conservation																											.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation																																																																															.	.
Template Sequence		L	E	L	E	E	K	L	A	K	A	L	H	Q	Q	G	F	V	Q	V	V	T	P	T	I	I	T	K	S	A	L	A	K	M	T	I	G	E	D	H	P	L	F	S	Q	V	F	W	L	D	G	K	K	C	L	R	P	M	L	A	P	N	L	Y	T	L	W	R	E	L	E	R	L	W	D	K	P	I	.	.	R
Template Known Secondary structure															T	T								S									T	T	T		S	S	S	S	T					S		B	S	S	S	S					S	S	S													T	T	S		S	S		.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		A	T	T	S	Q	R	C	V	R	A	G	G	K	H	N	D	L	E	N	V	G	Y	T	A	R	H	H	T	F	F	E	M	L	G	N	F	S	F	G	.	.	.	D	Y	F	K	H	D	A	I	Q	F	A	W	E	L	L	T	S	E	K	W	F	A	L	P	K	E	R	L	W	V	T	V	Y	E	S	D	D	E
Query Conservation																																									.	.	.
Alig confidence											.	.	.	.	.					.	.	.	.																		.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.					.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	F	E	I	G	T	C	Y	R	.	.	.	.	.	K	E	S	Q	.	.	.	.	G	A	Q	H	L	N	E	F	T	M	L	N	L	T	E	L	G	T	P	L	E	E	R	H	Q	R	L	E	D	M	A	R	W	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											.	.	.	.	.		S			.	.	.	.	S	S				S											T			G	G	G														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.					.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160						.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	E	I	W	E	K	E	V	G	I	P	R	E	R	I	I	R	I	G	D	N	K	G	A	P	Y	A	S	D	N	F	W	Q	M	G	D	T	G	P	C	G	P	C	T	E	I	F	Y	D	H	G	D	H	I	W	G	G	P	P	G	S	P	E	E	D	G	D	R	Y	I	E	I	W	N	I	V	F	M	Q
Query Conservation
Alig confidence		.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Conservation		.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Sequence		.	.	.	.	.	.	E	A	A	G	I	R	E	F	E	L	V	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	V	V	Y	G	D	T	V	D	V	M	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	L	E	L	A	S	.	.	G	A	M
Template Known Secondary structure		.	.	.	.	.	.				T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T						.	.
Template Predicted Secondary structure		.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template SS confidence
								200	.	.	.	.	.	.	.	.	.	210	.	.																		.	.	.	.	.	.	.	220	.	.	.	.	.																				.	.	.	.	230	.	.			.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	R	Q	A	D	G	T	M	E	P	L	P	K	P	S	V	D	T	G	M	G	L	E	R	I	A	A	V	L	Q	H	V	N	S	N
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		G	P	H	F	L	D	.	E	K	W	E	I	F	D	P	W	V	G	L	G	F	G	L	E	R	L	L	M	I	R	E	G	T	Q	H	V
Template Known Secondary structure			S		T	T	T	.	T	T	T	T			S																		T		S		G
Template Predicted Secondary structure								.
Template SS confidence
		236	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions