Job Description P00957 Confidence 62.78% Date Thu Jan 5 10:57:20 GMT 2012 Rank 52 Aligned Residues 170 % Identity 21% Template c2zimA_ PDB info PDB header:ligase Chain: A: PDB Molecule:pyrrolysyl-trna synthetase; PDBTitle: pyrrolysyl-trna synthetase bound to adenylated pyrrolysine and2 pyrophosphate Resolution 2.10 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.											.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.											.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	I	R	Q	A	F	L	D	F	F	H	S	K	G	H	Q	V	V	A	S	S	S	L	V	P	.	.	.	.	.	.	.	.	.	.	H	N	D	P	T	L	L	F	T	N	A	G	M	N	Q	F	K	D	V	F	.	.	.	.	.	.	.	.	.	.	L	G	L	D	K	R	N	Y	S	R	A	T	T	S
Query Conservation																												.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.														.							.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.
Template Sequence		G	K	L	E	R	E	I	T	R	F	F	V	D	R	G	F	L	E	I	K	S	P	I	L	I	P	L	E	Y	I	E	R	M	G	I	D	E	L	S	K	Q	I	F	R	V	D	K	N	F	.	C	L	R	P	M	L	A	P	N	L	Y	N	Y	L	R	K	L	D	R	A	L	P	D	P	I	K	I	F	E	I
Template Known Secondary structure															T	T								S				T						T	T					G	G	G					T	T	T		.				S		S												T	T	T	S		S	S
Template Predicted Secondary structure																																																			.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		Q	R	C	V	R	A	G	G	K	H	N	D	L	E	N	V	G	Y	T	A	R	H	H	T	F	F	E	M	L	G	N	F	S	F	G	.	D	Y	F	K	H	D	A	I	Q	F	A	W	E	L	L	T	S	E	K	W	F	A	L	P	K	E	R	L	W	V	T	V	Y	E	S	D	D	E	A	Y	E	I	W	E
Query Conservation																																					.
Alig confidence							.	.	.	.	.			.	.	.	.																				.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.			.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	P	C	Y	R	.	.	.	.	.	K	E	.	.	.	.	S	D	G	K	E	H	L	E	E	F	T	M	L	N	F	C	Q	M	G	S	G	C	T	R	E	N	L	E	S	I	I	T	D	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							.	.	.	.	.			.	.	.	.	S			S	S			S											S	T	T															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.			.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		326	.	.	.	330						.	.					.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	V	G	I	P	R	E	R	I	I	R	I	G	D	N	K	G	A	P	Y	A	S	D	N	F	W	Q	M	G	D	T	G	P	C	G	P	C	T	E	I	F	Y	D	H	G	D	H	I	W	G	G	P	P	G	S	P	E	E	D	G	D	R	Y	I	E	I	W	N	I	V	F	M	Q	F	N	R	Q	A	D
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	H	L	G	I	D	F	K	I	V	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	C	M	V	Y	G	D	T	L	D	V	M	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	L	E	L	S	S	A	V	V	G	P	I	P	L	D	R	E
Template Known Secondary structure					T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T									S			G	G	G	G	G
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.																			380	.	.	.	.	.	.	.	.	.	390	.	.																				.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	M	E	P	L	P	K	P	S	V	D	T	G	M	G	L	E	R	I	A	A	V	L	Q	H	V	N	S	N
Query Conservation
Alig confidence						.	.	.
Template Conservation						.	.	.
Template Sequence		W	G	I	D	.	.	.	K	P	W	I	G	A	G	F	G	L	E	R	L	L	K	V	K	H	D	F	K	N	I
Template Known Secondary structure		G	T			.	.	.	S																		T		S	S	G
Template Predicted Secondary structure						.	.	.
Template SS confidence
		411	.	.	.				.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions