Job Description P00957 Confidence 100.00% Date Thu Jan 5 10:57:20 GMT 2012 Rank 4 Aligned Residues 442 % Identity 55% Template c1yfsB_ PDB info PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: the crystal structure of alanyl-trna synthetase in complex2 with l-alanine Resolution 2.08 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	S	T	A	E	I	R	Q	A	F	L	D	F	F	H	S	K	G	H	Q	V	V	A	S	S	S	L	V	P	H	N	D	P	T	L	L	F	T	N	A	G	M	N	Q	F	K	D	V	F	L	G	L	D	K	R	N	Y	S	R	A	T	T	S	Q	R	C	V	R	A	G	G	K	H	N	D	L	E	N	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	S	A	H	E	I	R	E	L	F	L	S	F	F	E	K	K	G	H	T	R	V	K	S	A	P	L	V	P	E	N	D	P	T	L	L	F	V	N	A	G	M	V	P	F	K	N	V	F	L	G	L	E	K	R	P	Y	K	R	A	T	S	C	Q	K	C	L	R	V	S	G	K	H	N	D	L	E	Q	V
Template Known Secondary structure																			T	T									S	S		S	S		T	T		S	S			S	T	T	G	G	G						S	S	S			S		S													T	T				G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	T	A	R	H	H	T	F	F	E	M	L	G	N	F	S	F	G	D	Y	F	K	H	D	A	I	Q	F	A	W	E	L	L	T	S	E	K	W	F	A	L	P	K	E	R	L	W	V	T	V	Y	E	S	D	D	E	A	Y	E	I	W	E	K	E	V	G	I	P	R	E	R	I	I	R	I	G	D	N	K
Query Conservation
Alig confidence																																					.	.																																									.	.	.
Template Conservation																																					.	.																																									.	.	.
Template Sequence		G	Y	T	S	R	H	H	T	F	F	E	M	L	G	N	F	S	F	G	D	Y	F	K	K	E	A	I	E	Y	A	W	E	F	V	T	.	.	E	V	L	K	L	P	K	E	K	L	Y	V	S	V	Y	K	D	D	E	E	A	Y	R	I	W	N	E	H	I	G	I	P	S	E	R	I	W	R	L	G	.	.	.
Template Known Secondary structure		T	T	S	S	S			S											S	S																.	.	T	T	S				G	G	G							T	T										T	T	T				G	G	G						.	.	.
Template Predicted Secondary structure																																					.	.																																									.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	P	Y	A	S	D	N	F	W	Q	M	G	D	T	G	P	C	G	P	C	T	E	I	F	Y	D	H	G	D	H	I	W	G	G	P	P	G	S	P	E	E	D	G	D	R	Y	I	E	I	W	N	I	V	F	M	Q	F	N	R	Q	A	D	G	T	M	E	P	L	P	K	P	S	V	D	T	G	M	G	L
Query Conservation
Alig confidence		.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	E	E	D	N	F	W	Q	M	G	D	V	G	P	C	G	P	S	S	E	I	Y	V	D	R	G	E	E	Y	E	.	.	.	.	.	.	.	.	.	G	D	E	R	Y	L	E	I	W	N	L	V	F	M	Q	Y	N	R	D	E	N	G	V	L	T	P	L	P	H	P	N	I	D	T	G	M	G	L
Template Known Secondary structure		.	.	.	.								S	S	S	S															T	T	S		.	.	.	.	.	.	.	.	.																				T	T
Template Predicted Secondary structure		.	.	.	.																														.	.	.	.	.	.	.	.	.
Template SS confidence
						156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.										.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.					.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		E	R	I	A	A	V	L	Q	H	V	N	S	N	Y	D	I	D	L	F	R	T	L	I	Q	A	V	A	K	V	T	G	A	T	D	L	S	.	.	.	.	N	K	S	L	R	V	I	A	D	H	I	R	S	C	A	F	L	I	A	D	G	V	M	P	S	N	E	N	R	G	Y	V	L	R	R	I	I	R	R	A
Query Conservation																																						.	.	.	.
Alig confidence																																						.	.	.	.
Template Conservation
Template Sequence		E	R	I	A	S	V	L	Q	G	K	N	S	N	F	E	I	D	I	I	F	P	L	I	Q	F	G	E	E	V	S	G	K	K	Y	G	E	K	F	E	T	D	V	A	L	R	V	I	A	D	H	L	R	A	I	T	F	A	I	S	D	G	V	I	P	S	N	E	G	R	G	Y	V	I	R	R	I	L	R	R	A
Template Known Secondary structure									T	T		S	S	G	G	G	S	T	T	T												T			T	T	S																								T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.				.	.	390	.	.	.	.
Predicted Secondary structure																																																																								.	.	.
Query SS confidence																																																																								.	.	.
Query Sequence		V	R	H	G	N	M	L	G	A	K	E	T	F	F	Y	K	L	V	G	P	L	I	D	V	M	G	S	A	G	E	D	L	K	R	Q	Q	A	Q	V	E	Q	V	L	K	T	E	E	E	Q	F	A	R	T	L	E	R	G	L	A	L	L	D	E	E	L	A	K	L	S	G	.	.	.	D	T	L	D	G	E	T
Query Conservation																																																																								.	.	.
Alig confidence																																																																								.	.	.
Template Conservation
Template Sequence		M	R	F	G	Y	K	L	G	I	E	N	P	F	L	Y	K	G	V	D	L	V	V	D	I	M	K	E	P	Y	P	E	L	E	L	S	R	E	F	V	K	G	I	V	K	G	E	E	K	R	F	I	K	T	L	K	A	G	M	E	Y	I	Q	E	V	I	Q	K	A	L	E	E	G	R	K	T	L	S	G	K	E
Template Known Secondary structure								T	T			S														S	T	T	T		T					T																																		T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	R	L	Y	D	T	Y	G	F	P	V	D	L	T	A	D	V	C	R	E	R	N	I	K	V	D	E	A	G	F	E	A	A	M	E	E	Q	R	R	R	A	R	E	A	S	G	F	G	A	D	Y	N	A	M	I	R	V	D	S	A	S	E	F	K	G	Y	D	H	L	E
Query Conservation
Alig confidence																																															.	.	.	.
Template Conservation																																															.	.	.	.
Template Sequence		V	F	T	A	Y	D	T	Y	G	F	P	V	D	L	I	D	E	I	A	R	E	K	G	L	G	I	D	L	E	G	F	Q	C	E	L	E	E	Q	R	E	R	A	R	K	H	.	.	.	.	P	V	Y	S	H	L	K	E	L	G	K	T	S	A	F	V	G	A	A	A	L	A
Template Known Secondary structure								T	S													T	T	T																	T	G	G	G	T		.	.	.	.						T	T							T	T	S		T	T	T
Template Predicted Secondary structure																																															.	.	.	.
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.					.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.