Job Description P77460 Confidence 98.69% Date Thu Jan 5 12:29:28 GMT 2012 Rank 256 Aligned Residues 140 % Identity 13% Template c3bt7A_ PDB info PDB header:transferase/rna Chain: A: PDB Molecule:trna (uracil-5-)-methyltransferase; PDBTitle: structure of e. coli 5-methyluridine methyltransferase trma2 in complex with 19 nucleotide t-arm analogue Resolution 2.43 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																			.																																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.																																					.	.	.	.	.	.	.	.	.	.
Query Sequence		E	H	L	L	P	H	F	L	E	H	L	G	N	N	H	L	D	I	G	V	G	T	G	F	Y	L	T	H	V	P	E	S	S	.	L	I	S	L	M	D	L	N	E	A	S	L	N	A	A	S	T	R	A	G	E	S	K	I	K	H	K	I	S	H	D	V	F	E	P	Y	.	.	.	.	.	.	.	.	.	.
Query Conservation																																			.																																					.	.	.	.	.	.	.	.	.	.
Alig confidence										.																									.																																					.	.	.	.	.	.	.	.	.	.
Template Conservation										.
Template Sequence		E	W	A	L	D	V	T	K	.	G	S	K	G	D	L	L	E	L	Y	C	G	N	G	N	F	S	L	A	L	A	R	N	F	D	R	V	L	A	T	E	I	A	K	P	S	V	A	A	A	Q	Y	N	I	A	A	N	H	I	D	N	V	Q	I	I	R	M	A	A	E	E	F	T	Q	A	M	N	G	V	R	E
Template Known Secondary structure								T	T	.	T			S						S		T	T	S							G	G	G	S	S																						T	T			S								S								S	S
Template Predicted Secondary structure										.
Template SS confidence
		201	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
								84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	P	A	A	L	H	G	Q	F	D	S	I	S	M	S	Y	L	L	H	C	L	P	G	N	I	S	T	K	S	C	V	I	R	N	A	A	Q	A	L	T	D	D	G	T	L	Y	G	A	T	I	L	G	D	G	V	V	H	N	S	F	G	Q	K	L	M	R	I	Y	N	Q	K	G	I	F	S
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.																						.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.																						.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	N	R	L	Q	G	I	D	L	K	S	Y	Q	C	E	T	I	F	V	D	.	.	.	.	.	.	.	.	.	.	P	P	R	S	G	L	D	S	E	T	E	K	M	V	Q	A	Y	P	R	I	L	.	.	.	Y	I	S	C	N	P	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T	G	G	G	S		G	G	G										.	.	.	.	.	.	.	.	.	.			T	T											T	T	S	S				.	.	.				S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																						.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.											300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320				.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.										.	.	.	.	.	.	190	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.
Query Sequence		N	T	K	D	S	E	E	G	L	T	H	I	L	S	E	H	F	E	N	V	K	T	K	V	Q	G	.	.	.	.	.	.	.	.	.	T	V	V	M	F	S	A	S
Query Conservation																												.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.						.																	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.						.
Template Sequence		.	.	.	.	L	C	K	N	L	.	E	T	L	S	Q	T	H	K	V	E	R	L	A	L	F	D	Q	F	P	Y	T	H	H	M	Q	C	G	V	L	L	T	A	K
Template Known Secondary structure		.	.	.	.						.																		S	T	T	S	S
Template Predicted Secondary structure		.	.	.	.						.
Template SS confidence
						329	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions