Job Description P77460 Confidence 82.83% Date Thu Jan 5 12:29:28 GMT 2012 Rank 353 Aligned Residues 110 % Identity 15% Template c2hwkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:helicase nsp2; PDBTitle: crystal structure of venezuelan equine encephalitis2 alphavirus nsp2 protease domain Resolution 2.45 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	F	L	E	H	L	G	N	N	H	L	D	I	G	V	G	T	G	F	Y	L	T	H	V	P	E	S	S	L	I	S	L	M	D	L	N	E	A	S	L	N	A	A	S	T	R	A	G	E	S	K	I	K	H	K	I	S	H	D	V	F	E	P	Y	P	A	A	L	H	G	Q	F	D	S	I	S	M	S	Y
Query Conservation
Alig confidence																		.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	F	V	S	K	L	K	G	R	T	V	L	V	V	G	E	.	.	.	.	.	.	K	L	S	V	P	G	K	M	V	D	W	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	R	P	E	A	T	F	R	A	R	L	D	L	G	I	P	G	D	V	P	K	Y	D	I	I	F	V	N	V
Template Known Secondary structure						T	S	S		S							S	.	.	.	.	.	.					T	T	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	T	T		S					G	G	G		S		T	T	S
Template Predicted Secondary structure																		.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.							640	.	.	.	.	.	.	.	.	.	650	.																	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.
		99	100	.	.	.	.	.	.	.	.	.	110								.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure														.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.
Query Sequence		L	L	H	C	L	P	G	N	I	S	T	K	.	.	.	.	.	.	.	S	C	V	I	R	N	A	A	Q	A	L	T	D	D	G	T	L	Y	G	A	T	I	L	G	D	G	V	V	H	N	S	F	G	Q	K	L	M	R	I	Y
Query Conservation														.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	T	P	Y	K	Y	H	H	Y	Q	Q	C	E	D	H	A	I	K	L	S	M	L	T	K	K	A	C	L	H	L	N	P	G	G	T	C	V	S	I	G	Y	G	Y	A	D	R	A	S	E	S	I	I	G	A	I	A	R	Q	F
Template Known Secondary structure							S																T					G	G	G																S												T	T
Template Predicted Secondary structure
Template SS confidence
		682	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions