Job Description P0AAG0 Confidence 98.09% Date Thu Jan 5 11:12:50 GMT 2012 Rank 92 Aligned Residues 116 % Identity 22% Template c3thxB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh3; PDBTitle: human mutsbeta complexed with an idl of 3 bases (loop3) and adp Resolution 2.70 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.									.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.
Query Sequence		D	R	I	S	Y	S	V	K	Q	G	E	V	V	G	I	V	G	E	S	G	S	G	K	S	V	S	S	L	A	I	M	.	.	.	.	.	.	.	.	G	L	I	D	Y	P	G	R	V	M	A	E	K	L	E	F	N	G	Q	D	L	Q	R	I	S	E	K	E	R	R	N	L	V	G	A	E	V	A	M	I	F
Query Conservation																																	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.							.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	N	T	D	L	S	E	D	S	E	R	V	M	I	I	T	G	P	N	M	G	G	K	S	S	Y	I	K	Q	V	A	L	I	T	I	M	A	Q	I	G	S	Y	V	P	A	.	.	.	E	E	A	T	I	G	I	V	D	G	I	F	T	R	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	S								S																							T			B	S	S	.	.	.	S								S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																															.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		871	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.				.	.	.	.	920	.	.	.	.	.	.	.	.	.	930
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence		Q	D	P	M	T	S	L	N	P	C	Y	T	V	G	F	Q	I	M	E	A	I	K	V	H	Q	G	G	N	K	S	T	R	R	Q	R	A	I	D	L	L	N	Q	V	G	I	P	D	P	A	S	R	L	D	V	Y	P	H	Q	L	S	G	G	M	S	Q	R	V	M	I	A	M	A	I	.	.	A	C	R	P	K
Query Conservation																																																																											.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	M	E	E	L	T	D	T	A	E	I	I	R	K	A	T	S	Q	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																													941	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		L	L	I	A	D	E	P	T	T	A	L	D	V	T	I	Q	A	Q	I	.	I	E	L	L	L	E	L	Q	Q	K	E	N	M	A	L	V	L	I	T	H	D	L	A	L	V	A
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		L	V	I	L	D	E	L	G	R	G	T	S	T	H	D	G	I	A	I	A	Y	A	T	L	E	Y	F	I	R	D	V	K	S	L	T	L	F	V	T	H	Y	P	P	V	C	E
Template Known Secondary structure							S	T	T	T	T	S																			T	T									S		G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		962	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions