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Job DescriptionP0AAG0
Confidence100.00%DateThu Jan 5 11:12:50 GMT 2012
Rank20Aligned Residues238
% Identity19%Templatec3gd7C_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:fusion complex of cystic fibrosis transmembrane PDBTitle: crystal structure of human nbd2 complexed with n6-2 phenylethyl-atp (p-atp)
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
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Query Sequence  LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER
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Template Sequence  MTVKDLTAKYTEGGN. . AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT. . . . . EGEIQIDGVSWDSITLEQW
Template Known Secondary structure  SSTTS
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TT

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   1210.........1220.... .....1230.........1240.........1250.........1260... ......1270.........1280..
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
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Query Sequence  RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVM
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Template Sequence  R. . . . KAFGVIPQKVFI. . . FSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMC
Template Known Secondary structure  G....GGS




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SSB
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S
TTTT
TTTGGGSTTGGG
B

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   1283 ......1290..... ....1300.........1310.........1320.........1330.........1340.........1350.....
 
   164.....170.........180.........190.........200.........210.........220.........230.........240...
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Query Sequence  IAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHAIFH
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Template Sequence  LARSVLSKAKILLLDEPSAHLDPVTYQIIRRTL. . . KQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYH
Template Known Secondary structure  TT

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SSGGGSTT
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   1356...1360.........1370.........1380........ .1390.........1400.........1410.........1420.........1430..
 
   244.....250........
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Query Sequence  APRHPYTQALLRALP
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Template Sequence  YPADRFVAGFIGSPK
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   1433......1440.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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