Job Description P0AAG0 Confidence 100.00% Date Thu Jan 5 11:12:50 GMT 2012 Rank 24 Aligned Residues 231 % Identity 25% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	V	D	K	L	S	V	H	F	G	D	E	S	A	P	F	R	A	V	D	R	I	S	Y	S	V	K	Q	G	E	V	V	G	I	V	G	E	S	G	S	G	K	S	V	S	S	L	A	I	M	G	L	I	D	Y	P	G	R	V	M	A	E	K	L	E	F	N	G	Q	D	L	Q	R	I	S	E	K	E	R
Query Conservation
Alig confidence																		.																																								.	.	.	.
Template Conservation																		.																																								.	.	.	.
Template Sequence		V	Q	F	S	G	V	V	F	N	Y	P	T	R	P	S	I	.	P	V	L	Q	G	L	S	L	E	V	K	K	G	Q	T	L	A	L	V	G	S	S	G	C	G	K	S	T	V	V	Q	L	L	E	R	F	Y	D	P	.	.	.	.	M	A	G	S	V	F	L	D	G	K	E	I	K	Q	L	N	V	Q	W	L
Template Known Secondary structure												S		G	G	G		.		S			S							S	S	S							S	S	S	T	T									T	T	S	S			.	.	.	.	S						S	S	S	S		B	T	S	S
Template Predicted Secondary structure																		.																																								.	.	.	.
Template SS confidence
		1031	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.		.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.					.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.									.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.
Query Sequence		R	N	L	V	G	A	E	V	A	M	I	F	Q	D	P	M	T	S	L	N	P	C	Y	T	V	G	F	Q	I	M	E	A	I	K	V	H	Q	G	G	N	K	S	T	R	R	Q	R	A	I	D	L	L	N	Q	V	G	I	P	D	P	.	.	.	.	.	.	.	.	A	S	R	L	D	V	Y	P	H	Q	L	S
Query Conservation																																																														.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.													.	.	.																.	.	.	.	.																					.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.													.	.	.																.	.	.	.	.
Template Sequence		R	.	.	.	.	A	Q	L	G	I	V	S	Q	E	P	I	L	.	.	.	F	D	C	S	I	A	E	N	I	A	Y	G	D	N	S	.	.	.	.	.	R	V	V	S	Y	E	E	I	V	R	A	A	K	E	A	N	I	H	Q	F	I	D	S	L	P	D	K	Y	N	T	R	V	G	D	K	G	T	Q	L	S
Template Known Secondary structure		T	.	.	.	.	T	S						S	S				.	.	.		S	S	B						T				S	S	.	.	.	.	.																T						S	S	T	T	T	G	G	G		B		S	T	T	S		S	S
Template Predicted Secondary structure			.	.	.	.													.	.	.																.	.	.	.	.
Template SS confidence
		1106					.	.	.	1110	.	.	.	.	.	.	.	.				.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.						.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	M	S	Q	R	V	M	I	A	M	A	I	A	C	R	P	K	L	L	I	A	D	E	P	T	T	A	L	D	V	T	I	Q	A	Q	I	I	E	L	L	L	E	L	Q	Q	K	E	N	M	A	L	V	L	I	T	H	D	L	A	L	V	A	E	A	A	H	K	I	I	V	M	Y	A	G	Q	V	V	E	T
Query Conservation
Alig confidence																																																.	.																	.
Template Conservation																																																.	.																	.
Template Sequence		G	G	Q	K	Q	R	I	A	I	A	R	A	L	V	R	Q	P	H	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	K	V	V	Q	E	A	L	D	K	A	R	E	.	.	G	R	T	C	I	V	I	A	H	R	L	S	T	I	Q	N	.	A	D	L	I	V	V	I	Q	N	G	K	V	K	E	H
Template Known Secondary structure																			S	S					S		S	S	S																	S	S	.	.	S	S							S		T	T	G	G	G	S	.		S							T	B
Template Predicted Secondary structure																																																.	.																	.
Template SS confidence
		1174	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.			1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.		.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	A	H	A	I	F	H	A	P	R	H	P	Y	T	Q	A	L	L	R	A
Query Conservation
Alig confidence											.					.
Template Conservation											.					.
Template Sequence		G	T	H	Q	Q	L	L	A	Q	.	K	G	I	Y	.	F	S	M	V	S	V
Template Known Secondary structure										S	.		S			.
Template Predicted Secondary structure											.					.
Template SS confidence
		1251	.	.	.	.	.	.	.	.		1260	.	.	.		.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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