Job Description P0AAG0 Confidence 100.00% Date Thu Jan 5 11:12:50 GMT 2012 Rank 42 Aligned Residues 236 % Identity 27% Template c3b5wE_ PDB info PDB header:membrane protein Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba Resolution 5.30 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	V	D	K	L	S	V	H	F	G	D	E	S	A	P	F	R	A	V	D	R	I	S	Y	S	V	K	Q	G	E	V	V	G	I	V	G	E	S	G	S	G	K	S	V	S	S	L	A	I	M	G	L	I	D	Y	P	G	R	V	M	A	E	K	L	E	F	N	G	Q	D	L	Q	R	I	S	E	K	E	R
Query Conservation
Alig confidence																	.	.																																								.	.	.	.
Template Conservation																	.	.																																								.	.	.	.
Template Sequence		V	E	F	R	N	V	T	F	T	Y	P	G	R	D	V	.	.	P	A	L	R	N	I	N	L	K	I	P	A	G	K	T	V	A	L	V	G	R	S	G	S	G	K	S	T	I	A	S	L	I	T	R	F	Y	D	I	.	.	.	.	D	E	G	E	I	L	M	D	G	H	D	L	R	E	Y	T	L	A	S	L
Template Known Secondary structure					S	S		B		B		S	S	S	S		.	.	B	S	S		S							T	T							S	S	T	T	S	S								T	T	T		S			.	.	.	.	B	S	S					S	S	S	B	T	T	T	S
Template Predicted Secondary structure																	.	.																																								.	.	.	.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.			.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.					.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		R	N	L	V	G	A	E	V	A	M	I	F	Q	D	P	M	T	S	L	N	P	C	Y	T	V	G	F	Q	I	M	E	A	I	K	V	H	Q	G	G	N	K	S	T	R	R	Q	R	A	I	D	L	L	N	Q	V	G	I	.	.	P	D	P	A	S	R	L	D	V	Y	P	H	Q	L	S	G	G	M	S	Q	R
Query Conservation																																																											.	.
Alig confidence				.	.	.	.												.	.	.																																						.	.
Template Conservation				.	.	.	.												.	.	.
Template Sequence		R	N	.	.	.	.	Q	V	A	L	V	S	Q	N	V	H	L	.	.	.	F	N	D	T	V	A	N	N	I	A	Y	A	R	T	E	Q	Y	S	R	E	Q	I	E	E	A	A	R	M	A	Y	A	M	D	F	I	N	K	M	D	N	G	L	D	T	V	I	G	E	N	G	V	L	L	S	G	G	Q	R	Q	R
Template Known Secondary structure			T	.	.	.	.	T						S					.	.	.		S	S		B	S	T	T	T	T	S	S	S	S	T	T	S			T	T					T	T	T	T	S	T					T	T	S	S	S	S	S	B					T	T	S		S	S
Template Predicted Secondary structure				.	.	.	.												.	.	.
Template SS confidence
		416	.					.	.	420	.	.	.	.	.	.	.	.				.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	I	A	M	A	I	A	C	R	P	K	L	L	I	A	D	E	P	T	T	A	L	D	V	T	I	Q	A	Q	I	I	E	L	L	L	E	L	Q	Q	K	E	N	M	A	L	V	L	I	T	H	D	L	A	L	V	A	E	A	A	H	K	I	I	V	M	Y	A	G	Q	V	V	E	T	G	D	A	H	A	I
Query Conservation
Alig confidence																																										.	.																	.
Template Conservation																																										.	.																	.
Template Sequence		I	A	I	A	R	A	L	L	R	D	S	P	I	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	L	Q	K	.	.	N	R	T	S	L	V	I	A	H	R	L	S	T	I	E	K	.	A	D	E	I	V	V	V	E	D	G	V	I	V	E	R	G	T	H	N	D	L
Template Known Secondary structure				T					T	S			S							T	T	S	S									T	T					T	T	T	S	.	.	S	S							S	S	G	G	G	T	T	T	.		S	S	B					T	T							S	S	S
Template Predicted Secondary structure																																										.	.																	.
Template SS confidence
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.			.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.		.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	H	A	P	R	H	P	Y	T	Q	A	L	L	R	A	L
Query Conservation
Alig confidence				.	.
Template Conservation				.	.
Template Sequence		L	E	.	.	H	R	G	V	Y	A	Q	L	H	K	M	Q
Template Known Secondary structure				.	.	S		S	S						T	T	S
Template Predicted Secondary structure				.	.
Template SS confidence
		566	.			.	.	570	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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