Phyre 2 alignment of P0AAG0 with c2iw3B

Job Description P0AAG0
Confidence 100.00% Date Thu Jan 5 11:12:50 GMT 2012

Rank 54 Aligned Residues 224

% Identity 16% Template c2iw3B_

PDB info PDB header:translation Chain: B: PDB Molecule:elongation factor 3a; PDBTitle: elongation factor 3 in complex with adp

Resolution 2.4 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	L	L	N	V	D	K	L	S	V	H	F	G	D	E	S	A	P	F	R	A	V	D	R	I	S	Y	S	V	K	Q	G	E	V	V	G	I	V	G	E	S	G	S	G	K	S	V	S	S	L	A	I	M	G	L	I	D	Y	P	G	R	V	M	A	E	K	L	E	F	N	G	Q	D	L	Q	R	I	S	E	K
Query Conservation
Alig confidence																		.	.																																								.	.	.	.
Template Conservation																		.	.																																								.	.	.	.
Template Sequence	A	I	V	K	V	T	N	X	E	F	Q	Y	P	G	T	S	K	.	.	P	Q	I	T	D	I	N	F	Q	C	S	L	S	S	R	I	A	V	I	G	P	N	G	A	G	K	S	T	L	I	N	V	L	T	G	E	L	L	P	.	.	.	.	T	S	G	E	V	Y	T	H	E	N	C	R	I	A	Y	I	K	Q
Template Known Secondary structure		S											T	T		S	S	.	.		S										T	T							S	S													T	T	S	S			.	.	.	.	S								T	T
Template Predicted Secondary structure																		.	.																																								.	.	.	.
Template SS confidence
	664	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680			.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.					720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.

	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	R	R	N	L	V	G	A	E	V	A	M	I	F	Q	D	P	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	H	A	F	A	H	I	E	S	H	L	D	K	T	P	S	E	Y	I	Q	W	R	F	Q	T	G	E	D	R	E	T	X	D	R	A	N	R	Q	I	N	E	N	D	A	E	A	X	N	K	I	F	K	I	E	G	T	P	R	R	I	A	G	I	H	S	R	R	K	F	K	N	T	Y	E	Y	E	C	S	F	L	L
Template Known Secondary structure						G	G	G		T	T	S										T	T	T	S	S		T	T	T	T	T	T	T	S					S	S		S	S	S	T	T						T	T															T	T
Template Predicted Secondary structure
Template SS confidence
	738	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.

																										100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	L	N	P	C	Y	T	V	G	F	Q	I	M	E	A	I	K	V	H	Q	G	G	N	K	S	T	R	R	Q	R	A	I	D	L	L	N	Q	V	G	I	P	D	P	A	S	R	L	D	V	Y	P	H	Q	L
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation																																																																					.
Template Sequence	G	E	N	I	G	X	K	S	E	R	W	V	P	X	X	S	V	D	N	A	W	I	P	R	G	E	L	V	E	S	H	S	K	X	V	A	E	V	D	X	K	E	A	L	A	S	G	Q	F	R	P	L	T	R	K	E	I	E	E	H	C	S	X	L	G	L	D	P	.	E	I	V	S	H	S	R	I	R	G	L
Template Known Secondary structure			S	S	S	S	T	T								G	G	G						G	G	G	T																			T	T																	T	T				.						S		G	G	G	S
Template Predicted Secondary structure																																																																					.
Template SS confidence
	818	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.		.	.	.	.	890	.	.	.	.	.	.

	155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	G	G	M	S	Q	R	V	M	I	A	M	A	I	A	C	R	P	K	L	L	I	A	D	E	P	T	T	A	L	D	V	T	I	Q	A	Q	I	I	E	L	L	L	E	L	Q	Q	K	E	N	M	A	L	V	L	I	T	H	D	L	A	L	V	A	E	A	A	H	K	I	I	V	M	Y	A	G	Q	V	V	E
Query Conservation
Alig confidence																																														.	.	.	.
Template Conservation																																														.	.	.	.
Template Sequence	S	G	G	Q	K	V	K	L	V	L	A	A	G	T	W	Q	R	P	H	L	I	V	L	D	E	P	T	N	Y	L	D	R	D	S	L	G	A	L	S	K	A	L	K	E	F	.	.	.	.	E	G	G	V	I	I	I	T	H	S	A	E	F	T	K	N	L	T	E	E	V	W	A	V	K	D	G	R	X	T	P
Template Known Secondary structure														T	T	T			S							G	G	G	T																	.	.	.	.	S	S							S						T	T	T								B	T	T	B
Template Predicted Secondary structure																																														.	.	.	.
Template SS confidence
	897	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.					.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.

	235	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence	S	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	973	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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