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Job DescriptionP0AAG0
Confidence100.00%DateThu Jan 5 11:12:50 GMT 2012
Rank5Aligned Residues237
% Identity29%Templatec2it1B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin PDBTitle: structure of ph0203 protein from pyrococcus horikoshii
Resolution1.94 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
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Template Sequence  VE. IKLENIVKKFGNF. . . . TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT. . . . SGKIYFDEKDVTELPP
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.TT....
TT


TTSSTSS

S....TT
TTS
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   2. ......10...... ...20.........30.........40.........50...... ...60.........70..
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
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Template Sequence  KDRN. . . . . . VGLVFQNW. . ALYPHMTVYKNIAFPLEL. RKAPREEIDKKVREVAKMLHI. . . DKLLNRYPWQLSGGQQQ
Template Known Secondary structure  T......
TT
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TTS
.TT

TT
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GGGS
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   73... ...80.... .....90.........100.. .......110.........120... ......130.........140
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
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Template Sequence  RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDE
Template Known Secondary structure  TT

SSGGGGS
T
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   141........150.........160.........170.........180.........190.........200.........210.........220
 
   241........250........
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Query Sequence  IFHAPRHPYTQALLRALP
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Template Sequence  VYYKPKYKFVGGFLGNPP
Template Known Secondary structure  S
SBSBTTB
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   221........230........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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